Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g01441 | ATGGGCGGGGAAGACGAAGTGAGAGAGGCCATGGCGAAGAGGAGAGGAAAGGATAATCAGAGGCCGTACAAAGGGATTCGAATGAGAAAGTGGGGAAAATGGGTGGCTGAGATTCGAGAACCGAATAAACGCTCCAGAATTTGGCTCGGTTCGTACTCTTCGCCGGTGGCTGCAGCAAGGGCTTACGACACCGCCGTTTTCCACCTCAGAGGCCCATCGGCGCGACTTAACTTCCCGGAGCTATTAGCGGCGGAAGGATGTGGGATTTCCACTGGGGATGACATGTCAGCCGCTACAATAAGGAAGAAAGCCGCGGAGGTCGGAGCGAGAGTGGATGCTATCGAGAGTTCTCAGCCCTACGATCGACCGTCGTGCGCGGTGGTTCCGCCGTCGTTGAAGAGCGGCGGTCGGTTCTCAGATCGGGTCGATTTGAACAAGGTGCCCGACCTGGAAGAGTCGGAGGGAGAGCGAGCGTGTATAGGAGATTAG | 489 | 56.65 | MGGEDEVREAMAKRRGKDNQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPELLAAEGCGISTGDDMSAATIRKKAAEVGARVDAIESSQPYDRPSCAVVPPSLKSGGRFSDRVDLNKVPDLEESEGERACIGD | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19577032 | 19577520 | + | Bda008025.1 | Bda11g01441 | 16549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g01441 | 162 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 9 | 154 | - | - | |
Bda11g01441 | 162 | Gene3D | AP2/ERF domain | 22 | 80 | IPR036955 | GO:0003700|GO:0006355 | |
Bda11g01441 | 162 | SMART | rav1_2 | 22 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01441 | 162 | Pfam | AP2 domain | 23 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01441 | 162 | PRINTS | Ethylene responsive element binding protein signature | 61 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01441 | 162 | PRINTS | Ethylene responsive element binding protein signature | 23 | 34 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01441 | 162 | MobiDBLite | consensus disorder prediction | 119 | 147 | - | - | |
Bda11g01441 | 162 | ProSiteProfiles | AP2/ERF domain profile. | 22 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01441 | 162 | SUPERFAMILY | DNA-binding domain | 23 | 80 | IPR016177 | GO:0003677 | |
Bda11g01441 | 162 | CDD | AP2 | 23 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01441 | 162 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Bda11g01441 | 162 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 | 9 | 154 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00206 | Bda-Chr3:1623800 | Bda11g01441 | Bda-Chr11:19577032 | 2.82E-49 | dispersed | |
Bda11g01007 | Bda-Chr11:9873907 | Bda11g01441 | Bda-Chr11:19577032 | 4.15E-24 | dispersed | |
Bda11g01441 | Bda-Chr11:19577032 | Bda08g00591 | Bda-Chr8:6021313 | 1.34E-25 | dispersed | |
Bda11g01441 | Bda-Chr11:19577032 | Bda03g00204 | Bda-Chr3:1615397 | 1.18E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16694 | PF00847 | AP2 | 9.80E-11 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g01441 | K09286 | - | csv:101214481 | 206.838 |