Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01441 ATGGGCGGGGAAGACGAAGTGAGAGAGGCCATGGCGAAGAGGAGAGGAAAGGATAATCAGAGGCCGTACAAAGGGATTCGAATGAGAAAGTGGGGAAAATGGGTGGCTGAGATTCGAGAACCGAATAAACGCTCCAGAATTTGGCTCGGTTCGTACTCTTCGCCGGTGGCTGCAGCAAGGGCTTACGACACCGCCGTTTTCCACCTCAGAGGCCCATCGGCGCGACTTAACTTCCCGGAGCTATTAGCGGCGGAAGGATGTGGGATTTCCACTGGGGATGACATGTCAGCCGCTACAATAAGGAAGAAAGCCGCGGAGGTCGGAGCGAGAGTGGATGCTATCGAGAGTTCTCAGCCCTACGATCGACCGTCGTGCGCGGTGGTTCCGCCGTCGTTGAAGAGCGGCGGTCGGTTCTCAGATCGGGTCGATTTGAACAAGGTGCCCGACCTGGAAGAGTCGGAGGGAGAGCGAGCGTGTATAGGAGATTAG 489 56.65 MGGEDEVREAMAKRRGKDNQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPELLAAEGCGISTGDDMSAATIRKKAAEVGARVDAIESSQPYDRPSCAVVPPSLKSGGRFSDRVDLNKVPDLEESEGERACIGD 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19577032 19577520 + Bda008025.1 Bda11g01441 16549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01441 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 154 - -
Bda11g01441 162 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Bda11g01441 162 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Bda11g01441 162 Pfam AP2 domain 23 71 IPR001471 GO:0003700|GO:0006355
Bda11g01441 162 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Bda11g01441 162 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Bda11g01441 162 MobiDBLite consensus disorder prediction 119 147 - -
Bda11g01441 162 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Bda11g01441 162 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Bda11g01441 162 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Bda11g01441 162 MobiDBLite consensus disorder prediction 1 23 - -
Bda11g01441 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 9 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00206 Bda-Chr3:1623800 Bda11g01441 Bda-Chr11:19577032 2.82E-49 dispersed
Bda11g01007 Bda-Chr11:9873907 Bda11g01441 Bda-Chr11:19577032 4.15E-24 dispersed
Bda11g01441 Bda-Chr11:19577032 Bda08g00591 Bda-Chr8:6021313 1.34E-25 dispersed
Bda11g01441 Bda-Chr11:19577032 Bda03g00204 Bda-Chr3:1615397 1.18E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16694 PF00847 AP2 9.80E-11 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01441 K09286 - csv:101214481 206.838