Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01472 ATGAGTTGCAACGGGTGCAGAGTTCTCAGGAAAGGGTGCAGCGAGTCTTGTATTCTGCGGCCATGTTTACAGTGGATTGAGAGCGCTGAAGCTCAAGCCCACGCCACCACTTTTGTAGCTAAGTTCTTTGGCCGAGCTGGTCTCATGTCCTTTATCTCCGCCGTGCCTGAATCTCAGAGACCCTCGTTGTTTCAGTCACTGCTATTCGAAGCGTGTGGGCGGACAGTGAATCCTGTCAATGGCGCCGTCGGGCTTCTCTGGACGGGAAACTGGCATATGTGCCAGCAGGCGGTGGAAACTGTTCTTCGGGGAGGGACTTTGCGGGCTTTGCCGGAGGTTTTCGCCGGAGGAGGGTCTGGTTCCCCTTCTGACGAGGCGTCCGATATGGATTGTACGGACATATGGAAGCTCCGAGATCCGAAATTTAGTTCACGGCTCTCGAATTCTAGAAACAGACTTTCCCCTAACTGCAGGCGATTGGAGGGATTAATGAATCCGCAGCCCCCTCTCACCGATCTCGACCCCCGCCAGACGCCCATTGTGCAGGCCAAATTGTTGGAGCAACGAAGGCCAGGAAGCCCGTCGATGAATTCGGAGGAATCTGTGACAACAACATGCTTCCAAAGCAGTGTGGTCAGCGATCAGTACACACATGGAGGAACGAGAAAGCTTCTCAACTTATTCATCTAA 690 53.48 MSCNGCRVLRKGCSESCILRPCLQWIESAEAQAHATTFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHMCQQAVETVLRGGTLRALPEVFAGGGSGSPSDEASDMDCTDIWKLRDPKFSSRLSNSRNRLSPNCRRLEGLMNPQPPLTDLDPRQTPIVQAKLLEQRRPGSPSMNSEESVTTTCFQSSVVSDQYTHGGTRKLLNLFI 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21231420 21234503 - Bda008069.1 Bda11g01472 16580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01472 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 229 - -
Bda11g01472 229 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Bda11g01472 229 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Bda11g01472 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 229 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda10g00277 Bda11g01472 CCT
Bda10g00277 Bda11g01472 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00585 Bda-Chr1:32868651 Bda11g01472 Bda-Chr11:21231420 2.42E-51 dispersed
Bda01g01171 Bda-Chr1:46897207 Bda11g01472 Bda-Chr11:21231420 1.44E-54 dispersed
Bda01g01591 Bda-Chr1:51762676 Bda11g01472 Bda-Chr11:21231420 2.61E-48 dispersed
Bda10g00002 Bda-Chr10:51782 Bda11g01472 Bda-Chr11:21231420 2.49E-95 dispersed
Bda11g01472 Bda-Chr11:21231420 Bda13g01768 Bda-Chr13:40996293 1.76E-46 dispersed
Bda11g01472 Bda-Chr11:21231420 Bda08g01358 Bda-Chr8:54032646 8.39E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16697 PF03195 LOB 1.40E-25 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01472 - - zju:107424931 308.145