Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01477 ACCATGAGAGCTCATTATTTGAGCTTCTTTTTCTTTCTCTCATTTCTCATTTTCCTTCAAACCATCTCCATCAATGGTTCCTGCAAAGCTCGACCTACCCTTCACAGAAGAGCTCTGCACCAGCCACTTTTCCCGGTGAGCTCCGCGCCTCCACCGGAATCCGATTTAACTCCGCCGCCGCCGCCTACTCCGTCTGACCCTTCTTCAGGTACAGACGACCAGCCCTTCTTTCATGAATCCCCTTCAGGTTCCGTTCCAGATCACTATCAACCTCCTCCTTCGTCTTCCAATGTCACTTCGTCGATTCCGGAAGCTACTCAGCCGTCCAAGGGGGCGAAGACAGTCGCGATTGCAATCTCCGTCGGAATTGTCACTCTCGGAATGCTCTCTGCTCTCGCATTCTTCCTATATCGTCACCGGTCAAAACACTCTGGCGAGTCTCAGAAGCTAGTCGGAGGCCCCAATGGCGATGGATATCCAGACGACACTAGAGTGCCGCCGTCCAGCTTTCTTTATATCGGCACGGTCGAACCTAGTCAAAACTCCGTCGTGGAACGGAGAATAGCAAACGGCGCCAATAGTTCTCCTTATCGCAAGCTTAATTCCATTAAAATGTCGGATCGTTACCGTCCTAGTCCTGAATTGCAGCCGCTTCCACCCCTATTGAAACCTCCGGTGGCGATTTCTTCGTCTCCATCGTCATCTTCCAACGAGGAAAGCCAAGAGACGGCATTTCACACGCCGCAAGGCTCGTCGGTTGTCAGTCACGACGACGGAAACCATGTTTCGGCAATTACTTCAAAAGCCGATCTTAATTCAAATATTCGTGTTCCCCATTCAAAAAGAACTTCTCCGAAATCACGGCTTTCAGTCGCGTCGTCAAAGGTCGGTCAGTCTCCAGTCCCACCGTCGCCTCCTCCTCCGTCCCTTTTTCAGCAGCCTCAGCCTCTGATTTCATCAAACGGACCGAAATTTTTAAAGCATCCATCTCCACCGAATTTGTCTATCCTTCATTCACTTAGCAGTTCATATCCAAATCCAAAAGTACTGAACAAACCTGGTCTTCCTCTTCAACCTCCCCCTCCACCCCCACCTCCTCCGCCGCCATTAATCTCAAATCCTCAGAAAGTTGGATCTTCAGAAAGAAGTATTCCTACCTCGACTCCTACATTGTCGTCAGTGACTTGGACTGCAACCAAATCCAAATCAAACTCTCCTCGTAGTTCTAAGTTGTCAATTTCTGTTGAACAAGTCCCCAGAACCGTAAGCCCGCCGGAGAAACTTGAAGCAGACGACCCAGAGAGTGCTAAACCAAAATTGAAGCCCCTGCATTGGGACAAAGTGCGGGCAACTTCCAACCGAGCCACAGTTTGGGACCAACTGAAATCAAGCTCATTCCAGGTAAATGAGGACATGATGGAATCTCTTTTCGGCTTCAACTCTGCAAATCCTGTCTCAAAAGAGACAGGAAGAAAGACCACTTTCTCTTCCTCCATGGAAAAGGAAACTAGGGTGTTGGACCCAAAGAAATCACAGAACATTGCAATACTACTCAGAGCACTAAACGTGACAAGGGATGAAGTTGCAGAAGCTCTTTCAGATGGTAATCCAGAATGCTTAGGTGCAGAGCTTCTGGAAACTCTAGTAAAAATGGCCCCAACCAAAGAAGAAGAAATAAAACTCAGAGACTATCGAGGCGACGTCTCGAAACTCGGGTCTGCCGAACGATTTCTAAAGGCAGTGCTCGATATCCCATTTGCGTTCAAAAGGGTTGAAGCCATGCTATACAGAGCAAATTTCGACACAGAAGTGAAATATCTGAGGAAAGCATTTCAAGCACTAGAGGCAGCGAGCGAAGAACTCAAGAGCAGCCGACTTTTCCTTAAACTCCTCGAAGCTGTTCTTAAGACGGGAAATCGAATGAACGTGGGAACGAATCGTGGGGAAGCGACAGCGTTCAAGCTCGAGACTCTCTTAAAACTAGTAGATATAAAAGGCACGGACGGGAAGACAACTTTGCTTCACTTTGTCGTCCAAGAAATAATTCGATCCGAAGGCGAAGGTGGCGAATCGTTGAATGGAAATCTTCCAAATAACGGGCAGTCAAACATGAAGGAGGACCAATTTAAGAAACAAGGATTGAAGATTGTGGCTGGACTGAGCAGAGACCTCACAAATGTCAAAAAAGCAGCCAATATGGATGCAGATGTCTTAAGCAGCTATGTTTCAAAGCTAGAAATAGGTCTCGAAAAAGTACGATTGGTTTTACAAATCGAGAAGCCGGACGGGCAGGCGAAATTCTTCAACTCCATGAACTTGTTTCTCAAGGAGGCAGAGGGGGAAATAATTTGGATCAAAGCGGACGAAAAAAAGGTGTTATGGCTTGTAAAAGGAGTCACAGAATACTTCCATGGAAATGCTGCAAAAGAAGAAGCTCATCCTTTTAGAATATTTATGATAGTGAGAGATTTCTTAAGCATATTGGATCAAGTTTGCAAGGAAGTAGGGAGGATCCATGAAGGAGTAGTGATGGGTTCGGCTCGATCTTTTCGAATATCTTCCACTGTTTCATTGCCGGTCCTCAAACGTTATAACACCAGACGAGATCAAAGTTCCGACGAAGAAAGCTCATCGTCCTGA 2640 46.86 TMRAHYLSFFFFLSFLIFLQTISINGSCKARPTLHRRALHQPLFPVSSAPPPESDLTPPPPPTPSDPSSGTDDQPFFHESPSGSVPDHYQPPPSSSNVTSSIPEATQPSKGAKTVAIAISVGIVTLGMLSALAFFLYRHRSKHSGESQKLVGGPNGDGYPDDTRVPPSSFLYIGTVEPSQNSVVERRIANGANSSPYRKLNSIKMSDRYRPSPELQPLPPLLKPPVAISSSPSSSSNEESQETAFHTPQGSSVVSHDDGNHVSAITSKADLNSNIRVPHSKRTSPKSRLSVASSKVGQSPVPPSPPPPSLFQQPQPLISSNGPKFLKHPSPPNLSILHSLSSSYPNPKVLNKPGLPLQPPPPPPPPPPPLISNPQKVGSSERSIPTSTPTLSSVTWTATKSKSNSPRSSKLSISVEQVPRTVSPPEKLEADDPESAKPKLKPLHWDKVRATSNRATVWDQLKSSSFQVNEDMMESLFGFNSANPVSKETGRKTTFSSSMEKETRVLDPKKSQNIAILLRALNVTRDEVAEALSDGNPECLGAELLETLVKMAPTKEEEIKLRDYRGDVSKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDTEVKYLRKAFQALEAASEELKSSRLFLKLLEAVLKTGNRMNVGTNRGEATAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGEGGESLNGNLPNNGQSNMKEDQFKKQGLKIVAGLSRDLTNVKKAANMDADVLSSYVSKLEIGLEKVRLVLQIEKPDGQAKFFNSMNLFLKEAEGEIIWIKADEKKVLWLVKGVTEYFHGNAAKEEAHPFRIFMIVRDFLSILDQVCKEVGRIHEGVVMGSARSFRISSTVSLPVLKRYNTRRDQSSDEESSSS 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21468272 21471468 + Bda008076.1 Bda11g01477 16585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01477 879 MobiDBLite consensus disorder prediction 89 108 - -
Bda11g01477 879 PANTHER FORMIN-RELATED 10 879 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bda11g01477 879 MobiDBLite consensus disorder prediction 334 348 - -
Bda11g01477 879 SUPERFAMILY Formin homology 2 domain (FH2 domain) 359 839 - -
Bda11g01477 879 MobiDBLite consensus disorder prediction 143 166 - -
Bda11g01477 879 MobiDBLite consensus disorder prediction 299 313 - -
Bda11g01477 879 Pfam Formin Homology 2 Domain 433 828 IPR015425 -
Bda11g01477 879 MobiDBLite consensus disorder prediction 227 298 - -
Bda11g01477 879 ProSiteProfiles Formin homology-2 (FH2) domain profile. 430 854 IPR015425 -
Bda11g01477 879 MobiDBLite consensus disorder prediction 208 439 - -
Bda11g01477 879 MobiDBLite consensus disorder prediction 45 68 - -
Bda11g01477 879 MobiDBLite consensus disorder prediction 43 111 - -
Bda11g01477 879 Gene3D Formin, FH2 domain 425 838 IPR042201 -
Bda11g01477 879 SMART it6_source 430 843 IPR015425 -
Bda11g01477 879 MobiDBLite consensus disorder prediction 425 439 - -
Bda11g01477 879 PANTHER FORMIN-LIKE PROTEIN 6 10 879 - -
Bda11g01477 879 MobiDBLite consensus disorder prediction 374 419 - -
Bda11g01477 879 MobiDBLite consensus disorder prediction 352 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01477 - - - cmo:103497354 980.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01477 Bda-Chr11:21468272 Bda13g00633 Bda-Chr13:7306308 3.28E-122 dispersed
Bda07g01671 Bda-Chr7:31009231 Bda11g01477 Bda-Chr11:21468272 4.22E-85 transposed
Bda08g01073 Bda-Chr8:23385183 Bda11g01477 Bda-Chr11:21468272 5.29E-138 transposed
Bda11g01477 Bda-Chr11:21468272 Bda14g01277 Bda-Chr14:13667115 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g937 Blo04g01082 Blo16g00351 . . . Bpe15g00301 . . . . Cma02g00531 . Car02g00366 . . . . . . . . . . . Cla01g01710 Cam01g1796 Cec04g1443 Cco04g1507 Clacu01g1821 Cmu01g1699 Cre04g1372 Cone6ag1454 Cone9ag1375 . . Lsi01g00902 . . Cme08g00643 . . Bda11g01477 . Bpe13g00127 . Bma03g01142 Bma06g00347 Sed14g0912 Cmo02g00543 . . . . . . Cpe05g01150 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01477 . 397 850 FH2 protein (formin) Gene Family AT3G25500 58.5 1.3e-133 474.6
Bda14g01277 . 431 867 FH2 protein (formin) Gene Family AT3G25500 60.0 1.7e-133 474.2
Bda08g01073 . 394 826 FH2 protein (formin) Gene Family AT3G25500 52.6 3.4e-110 396.7
Bda07g01671 . 463 718 FH2 protein (formin) Gene Family AT3G25500 69.9 3.2e-92 337.0
Bda11g01477 . 415 871 FH2 protein (formin) Gene Family AT2G43800 53.8 3.5e-124 443.0
Bda14g01277 . 444 879 FH2 protein (formin) Gene Family AT2G43800 54.5 8.1e-121 431.8
Bda13g00633 BCT 159 433 FH2 protein (formin) Gene Family AT4G15200 50.7 2.1e-56 216.9
Bda07g00336 BCT 379 528 FH2 protein (formin) Gene Family AT4G15200 62.9 3.1e-47 186.4
Bda07g00336 BCT 391 848 FH2 protein (formin) Gene Family AT5G54650 63.7 9.9e-159 557.8
Bda13g00633 BCT 299 756 FH2 protein (formin) Gene Family AT5G54650 63.4 1.0e-155 547.7
Bda06g00343 BCT 284 727 FH2 protein (formin) Gene Family AT5G54650 59.9 1.2e-148 524.2
Bda08g01073 . 425 831 FH2 protein (formin) Gene Family AT5G54650 52.0 1.1e-109 394.8
Bda11g01477 . 429 835 FH2 protein (formin) Gene Family AT5G54650 50.5 4.1e-104 376.3
Bda09g00382 BCT 187 493 FH2 protein (formin) Gene Family AT5G54650 58.9 6.1e-92 335.9
Bda14g01277 . 35 886 FH2 protein (formin) Gene Family AT5G67470 54.0 1.6e-212 736.5
Bda11g01477 . 35 878 FH2 protein (formin) Gene Family AT5G67470 55.1 1.0e-208 723.8
Bda08g01073 . 430 829 FH2 protein (formin) Gene Family AT5G67470 53.4 2.5e-109 393.7
Bda07g01671 . 467 735 FH2 protein (formin) Gene Family AT5G67470 54.4 1.2e-63 241.9
Bda10g01006 . 250 727 FH2 protein (formin) Gene Family AT1G59910 50.4 1.0e-118 424.9
Bda10g01006 . 127 724 FH2 protein (formin) Gene Family AT1G70140 50.2 6.9e-137 485.0
Bda11g01477 . 413 835 FH2 protein (formin) Gene Family AT3G05470 50.2 4.6e-108 389.4
Bda14g01277 . 448 850 FH2 protein (formin) Gene Family AT3G05470 50.4 4.7e-105 379.4
Bda11g01706 BCT 4 162 FH2 protein (formin) Gene Family AT1G31810 59.4 1.3e-39 162.5
Bda14g00861 BCT 1539 1858 FH2 protein (formin) Gene Family AT5G07650 71.6 2.6e-123 439.9
Bda03g00096 . 354 676 FH2 protein (formin) Gene Family AT5G07650 60.7 6.8e-103 372.1
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT5G07650 70.2 8.7e-50 195.7
Bda14g00861 BCT 1449 1853 FH2 protein (formin) Gene Family AT5G07770 63.1 1.6e-133 473.4
Bda03g00096 . 353 669 FH2 protein (formin) Gene Family AT5G07770 58.4 5.1e-95 345.5
Bda11g01706 BCT 4 146 FH2 protein (formin) Gene Family AT5G07770 66.7 1.1e-44 178.3
Bda14g00861 BCT 1463 1858 FH2 protein (formin) Gene Family AT3G32400 64.3 3.1e-138 488.8
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT3G32400 73.5 2.1e-126 449.5
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT3G32400 62.9 2.7e-41 166.8
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT2G25050 65.6 1.8e-43 175.3
Bda14g00861 BCT 1464 1858 FH2 protein (formin) Gene Family AT5G07780 59.9 2.4e-116 416.0
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT5G07780 56.7 2.6e-86 316.2
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT5G07780 70.2 1.9e-44 177.2
Bda11g01706 BCT 4 160 FH2 protein (formin) Gene Family AT5G07740 75.3 2.0e-56 218.8
Bda14g00861 BCT 1538 1867 FH2 protein (formin) Gene Family AT5G07760 69.3 6.7e-120 428.7
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT5G07760 61.2 2.8e-102 370.2
Bda11g01706 BCT 6 149 FH2 protein (formin) Gene Family AT5G07760 69.0 4.6e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01477 Bda_Chr11 FPKM 2.401993 1.71893 0.0 0.0 7.278839 8.906456 8.806345 1.15308 1.150201