Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01478 ATGGAGAGGTTTCTGGAGGAGAACTTTGGAGGTGTGAAGCCGAAGCACTCATCGGAGGAGGCTTTGCAGAGATGGAGGAAGGTTTGTGGTGTGGTGAAGAATCCGAAGCGGAGATTTCGCTTCACTGCTAATCTCTCTAAGCGGTATGAGGCAGCTGCCATGCGTCAGAACAATCAGGAAAAGTTGAGAATTGCAGTTTTGGTTTCGAAAGCCGCATTTCAATTTATCCAAGGTTCCCATAATTTGTTTCATGATCCTACAGGTGTTCATCCTAGTGATTACACTGTGCCCAAAGAGGTTAAAGAGGCAGGTTTTGAAATTTGTGGCGATGAATTGGGATCCATTGTCGAAGGCCATGATCTGAAGAAGCTTAAATTTCATGGTGGGGTTTCTGGTATTGTAGAAAAGCTCTCCACATCGACAACAAACGGGCTTTCTGTTGATTCTGCTTTGCTGAGTCGGAGGCAAGAGATCTACGGAGTCAATAGATTCACGGAGAGTGAATCTAGGAGTTTCTTCGTTTTCGTATGGGAAGCCCTTCAAGACATGACTCTCATGATCCTAGGAGTTTGCGCATTTGTATCACTGATCGTTGGGATTATCATGGAAGGATGGCCGAAAGGGTCCCACGACGGGCTCGGCATTGTTGCCAGCATCTTGCTGGTTGTGTTCGTCACTGCAACTAGTGATTATCGCCAGTCTTTGCAGTTCAAGGATTTGGACAAGGAGAAAAAGAAGATATCAATCCAAGTTACGAGAAGTGGTTATAGGCAGAAAATGTCAATATACGACCTACTTCCGGGCGATATTGTGCATCTTTCTATCGGAGACCAAGTCCCCGCGGATGGATTATTTATTTCAGGATTCTCTGTGCTAATTGACGAATCCAGTTTGACCGGGGAGAGTGAGCCGGTAATGGTCAGTTCTCAGAGTCCGTTTCTCCTTTCCGGAACCAAGGTTCAAGACGGATCGTGCAAGATGATCGTTACTACTGTCGGCATGAGAACTCAATGGGGTAAATTGATGGCAACCCTTAGTGAGGGTGGAGATGATGAAACTCCATTGCAGGTTAAATTAAATGGAGTGGCAACTATTATTGGAAAAATTGGTCTTTTCTTTGCTGTGGTAACTTTTGCTGTATTGGTTCAAGGGTTGTTTAGCAGTAAAATTCGAGAGGGTACCCACTGGAGCTGGTCCGGAGATGATGCCCTGCAAATGCTTGAATTCTTTGCTGTTGCAGTTACAATTGTTGTCGTGGCTGTACCGGAAGGGCTGCCATTGGCTGTGACCTTGAGCCTTGCCTTTGCCATGAAGAAGATGATGAACGATAAAGCACTGGTTCGACATCTTGCAGCCTGTGAGACAATGGGATCGGCCACAAGTATCTGTAGCGACAAGACTGGAACATTAACGACCAATCACATGACTGTTGTCAAATCATGCATTTGTATGAATGTGGAAAATGCCGAAAAGGCTTCCGTCTTGATCTCAACTCTCCCTGAATCTGCTAAGAAGCTACTTCTTCAGTCAATATTCAACAACACTGGAGGAGAAGTGGTGGTGAACAAAGATGGAAAGCGCGAGATTTTGGGAACACCAACCGAGACTGCATTATTAGAATTTGGTTTGTCACTCGGTGGAGATTTTCTGACTGAGAGGCAAGCCTGTAAGCTTCTTAAAGTTGAGCCATTCAACTCTCTGAAAAAGCGAATGGGAGTAATGATCGAACTTCCCGAAGGTGGCATAAGAGCTCATACCAAAGGTGCTTCAGAAATAGTTCTAGCTGCCTGCGAAAAGGTCATAAATTCAAATGGGGAGATCGTGCCTCTCGATGAAGGATCCGTTAAGCATCTCAACAGCACTATCGATCAGTTCGCAAATGAAGCTCTCCGAACTCTATGCCTTGCCTATATGGAACTTGAAAATGGAGTCTCTGTAGAGAATCCTATTCCCTCTACTGGGTTTACTTGCATAGGAATTGTGGGTATTAAAGATCCGGTTCGTCCTGGTGTAAAGGAGTCAGTGGCCGTATGTCGTTCAGCTGGCATAACTGTGAGAATGGTTACGGGAGATAATATCAATACGGCTAAGGCAATAGCTAGGGAATGTGGGATTCTCACTGACGATGGCTTAGCTATAGAAGGTCCAGATTTTCGAGAGAAGAGCCAGAAGGAGTTGCTTGAACTTATCCCTAAAATTCAGGTGATGGCTAGATCTTCACCTCTAGATAAGCATACACTTGTGAAACACCTGCGAACCACATTTGATGAAGTTGTTGCTGTAGTGGCTAAAGAGAGTGCTGATGTCATTATTCTAGATGATAATTTCTCTACAATCGTCACTGTGGCAAAATGGGGTCGTTCAGTTTATGTAAACATTCAAAAATTTGTACAGTTTCAGCTGACTGTTAATATCGTAGCATTGATAGTTAACTTCTCATCAGCATGTTTAACAGGGACTGCTCCGCTGACAGCGGTTCAGCTTTTGTGGGTGAACATGATTATGGATACTTTAGGTGCACTAGCTCTTGCAACTGAGCCTCCAAATGATGAACTAATGAAGCGAACCCCAGTGGGAAGAAAAGGAAATTTCATTAGCAATGTTATGTGGAGGAACATCTTAGGACAATCCTTGTATCAGTTTTTTGTTATATGTCTTCTTCAGGCAAAAGGAAAAGCAATATTCGGTCTTCTCGGCCCAGATTCCGAGCTGATCCTCAATACCCTTATCTTCAATTCATTTGTTTTCTGTCAGATTTTCAACGAAGTAAGTTCGCGCGAGATGGAAGAAATAGACGTCTTCAAAGGCATTCTGGATAACTATGTTTTTGTTGGTGTTCTCACTTGCACGGTTTTCTTCCAAATCATAATTATCGAGTTTCTCGGAACGTTTGCCAATACCACACCCCTTACTTTGCCTCAATGGTTTGTTAGTATACTTATCGGGTTTTTGGGGATGCCGATTGCGGCTTGGTTGAAGACGATTCCAGTGTAA 2994 43.92 MERFLEENFGGVKPKHSSEEALQRWRKVCGVVKNPKRRFRFTANLSKRYEAAAMRQNNQEKLRIAVLVSKAAFQFIQGSHNLFHDPTGVHPSDYTVPKEVKEAGFEICGDELGSIVEGHDLKKLKFHGGVSGIVEKLSTSTTNGLSVDSALLSRRQEIYGVNRFTESESRSFFVFVWEALQDMTLMILGVCAFVSLIVGIIMEGWPKGSHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRSGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFISGFSVLIDESSLTGESEPVMVSSQSPFLLSGTKVQDGSCKMIVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLFSSKIREGTHWSWSGDDALQMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVVKSCICMNVENAEKASVLISTLPESAKKLLLQSIFNNTGGEVVVNKDGKREILGTPTETALLEFGLSLGGDFLTERQACKLLKVEPFNSLKKRMGVMIELPEGGIRAHTKGASEIVLAACEKVINSNGEIVPLDEGSVKHLNSTIDQFANEALRTLCLAYMELENGVSVENPIPSTGFTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGLAIEGPDFREKSQKELLELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVVAKESADVIILDDNFSTIVTVAKWGRSVYVNIQKFVQFQLTVNIVALIVNFSSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRTPVGRKGNFISNVMWRNILGQSLYQFFVICLLQAKGKAIFGLLGPDSELILNTLIFNSFVFCQIFNEVSSREMEEIDVFKGILDNYVFVGVLTCTVFFQIIIIEFLGTFANTTPLTLPQWFVSILIGFLGMPIAAWLKTIPV 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21500638 21504664 - Bda008078.1 Bda11g01478 16586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01478 997 Gene3D - 17 77 - -
Bda11g01478 997 SMART Cation_ATPase_N_a_2 126 200 IPR004014 -
Bda11g01478 997 Gene3D - 460 760 IPR023214 -
Bda11g01478 997 PANTHER CALCIUM-TRANSPORTING ATPASE 1 762 996 - -
Bda11g01478 997 Gene3D - 761 996 - -
Bda11g01478 997 SUPERFAMILY Calcium ATPase, transmembrane domain M 127 996 IPR023298 -
Bda11g01478 997 Pfam haloacid dehalogenase-like hydrolase 659 719 - -
Bda11g01478 997 SUPERFAMILY HAD-like 451 780 IPR036412 -
Bda11g01478 997 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Bda11g01478 997 PANTHER CATION TRANSPORTING ATPASE 5 762 - -
Bda11g01478 997 Pfam Cation transporting ATPase, C-terminus 821 994 IPR006068 -
Bda11g01478 997 ProSitePatterns E1-E2 ATPases phosphorylation site. 465 471 IPR018303 -
Bda11g01478 997 Gene3D - 473 666 IPR023299 GO:0000166
Bda11g01478 997 SUPERFAMILY Calcium ATPase, transduction domain A 249 343 IPR008250 -
Bda11g01478 997 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 122 761 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Bda11g01478 997 Pfam E1-E2 ATPase 247 441 - -
Bda11g01478 997 Gene3D - 178 459 - -
Bda11g01478 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 489 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda11g01478 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 215 386 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda11g01478 997 Pfam Cation transporter/ATPase, N-terminus 127 195 IPR004014 -
Bda11g01478 997 PANTHER CALCIUM-TRANSPORTING ATPASE 1 5 762 - -
Bda11g01478 997 PRINTS P-type cation-transporting ATPase superfamily signature 681 691 - -
Bda11g01478 997 PRINTS P-type cation-transporting ATPase superfamily signature 760 772 - -
Bda11g01478 997 PRINTS P-type cation-transporting ATPase superfamily signature 659 670 - -
Bda11g01478 997 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Bda11g01478 997 PRINTS P-type cation-transporting ATPase superfamily signature 294 308 - -
Bda11g01478 997 PRINTS Sodium/potassium-transporting ATPase signature 584 602 - -
Bda11g01478 997 PRINTS Sodium/potassium-transporting ATPase signature 213 233 - -
Bda11g01478 997 PRINTS Sodium/potassium-transporting ATPase signature 456 477 - -
Bda11g01478 997 Pfam Cation transport ATPase (P-type) 522 600 - -
Bda11g01478 997 PANTHER CATION TRANSPORTING ATPASE 762 996 - -
Bda11g01478 997 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 469 671 IPR023299 GO:0000166
Bda11g01478 997 Gene3D - 144 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00590 Bda-Chr1:32895573 Bda11g01478 Bda-Chr11:21500638 0 dispersed
Bda03g01554 Bda-Chr3:54677413 Bda11g01478 Bda-Chr11:21500638 0 dispersed
Bda05g01038 Bda-Chr5:58817771 Bda11g01478 Bda-Chr11:21500638 0 dispersed
Bda11g01478 Bda-Chr11:21500638 Bda12g01035 Bda-Chr12:42089457 0 dispersed
Bda11g01478 Bda-Chr11:21500638 Bda03g00182 Bda-Chr3:1491857 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01478 K01537 - mnt:21392732 1668.29