Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01486 ATGCTGATGTTTCAGCCTTCGAAGAGAGATGGGGTTGTTGGTTTTGACGGTGGTGGACCTGGGCATGTCCTAGATCTGGACACGGCCGTAAAAGATGGGGCATTGGGCGGCATTGGCGGCGGTGATGGTATCGGAACCGGAGCTGTCGAAAAATTAGATCTGAAGAAGATGATTGAAGATCTAAACTTATCTGAGGTGCCGTCGGTGTTCATCTGCCCCATCTCTCTCGAGCCAATGCAAGACCCAGTAACCCTTTGCACAGGCCAAACCTACGAGAGATCGAACATTCTCAAATGGTTCAATTTGGGGCATTACACCTGTCCTACAACGATGCAGGAACTATGGGATGATTCCATTACTCCAAATACCACACTTTACCATTTAATCTACACTTGGTTTACCCAGAAGTATCTATTGATGAAGAAAAGGTCCGAAGACGTACAAGGAAGAACATCAGAAATTCTCAAAAACCTAAAAAAAGTGAAGGGCCAGGGTAGAGTTCAAGCCCTGAAGGAGCTCCGACAATTCGTGGCAGCTCATGGAACAGTCAAGAAAACAGTGATCGAGGAAGGAGGAATTTCTATTATTACATCATTATTAGGTCCTTTTACTTCTCACGCTGTTGGGTCTGAAGCCATTGGGATTCTTGTAAATTTAGAACTCGATTCGGACTCGAAAATGAATCTACTGCAGCCTGCAAAATTTTCTCTGGTAGTGGATATTTTAAACGATGGTTCAATTGGAACTAAAACCAATTGTACCCTTCTGATCGAGAAGCTGATGGAAGATAAGGATTTCCAGTCAGAAATTGTCTCAAGCCACAGACTTTTAGTTGGATTAATGAGACTGATCAAAGATAAGAGGCACCCAAATGGTGTCTATTCCGGACTCAAACTCCTCAAAAAAATCTGTGCGCATTTGGAAGTGAGGTATTTGGTCGTAAGCATCGGTGTGGTTCCACAATTGGTTGAAATGTTACCTTCTCTTGGCCCTGATAGCTTAGAGCTCGTACTCGTTATATTGGAAAACTTGTCGTCACTACCTGAAGGAGGATTAGCATTAAAAGAGTGCTTAGAAACAATACCGAACATGGTGAAGCTCATTATGAGAGTCTCCGAGAGCTGTACTCGATATGCATTGTCAATCTTATCGGCTCTGTGTAAACTTGCCCCTGATGAATGTTCTTCTGTTGCCGTTGATGAAGGTCTGGCAGCTAAGCTCCTCCTTGTGATTCAAAGTGGGTGTGGGCCGGCTTTGAAGCAGCAATCTGCAGAGCTATTGAAGTTTTGTAGTCTAAATTATACAGATACAACATTCATTTCCAAGTGCAAGCTTTCAAGAACTATACAATGA 1353 43.31 MLMFQPSKRDGVVGFDGGGPGHVLDLDTAVKDGALGGIGGGDGIGTGAVEKLDLKKMIEDLNLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHYTCPTTMQELWDDSITPNTTLYHLIYTWFTQKYLLMKKRSEDVQGRTSEILKNLKKVKGQGRVQALKELRQFVAAHGTVKKTVIEEGGISIITSLLGPFTSHAVGSEAIGILVNLELDSDSKMNLLQPAKFSLVVDILNDGSIGTKTNCTLLIEKLMEDKDFQSEIVSSHRLLVGLMRLIKDKRHPNGVYSGLKLLKKICAHLEVRYLVVSIGVVPQLVEMLPSLGPDSLELVLVILENLSSLPEGGLALKECLETIPNMVKLIMRVSESCTRYALSILSALCKLAPDECSSVAVDEGLAAKLLLVIQSGCGPALKQQSAELLKFCSLNYTDTTFISKCKLSRTIQ 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21877056 21878408 + Bda008092.1 Bda11g01486 16594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01486 450 SUPERFAMILY ARM repeat 164 433 IPR016024 -
Bda11g01486 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Bda11g01486 450 Gene3D - 139 443 IPR011989 -
Bda11g01486 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Bda11g01486 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Bda11g01486 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Bda11g01486 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 39 449 - -
Bda11g01486 450 PANTHER WDSAM1 PROTEIN 39 449 IPR045185 GO:0061630
Bda11g01486 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
Bda11g01486 450 SUPERFAMILY RING/U-box 61 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00203 Bda-Chr11:2590679 Bda11g01486 Bda-Chr11:21877056 1.81E-31 dispersed
Bda11g01486 Bda-Chr11:21877056 Bda07g00590 Bda-Chr7:7230889 1.71E-34 dispersed
Bda11g01486 Bda-Chr11:21877056 Bda14g01286 Bda-Chr14:13809331 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01486 - - qsu:112015041 683.33