Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01553 ATGGCTGAAACCCTCAAGCTTCGTATCGTGATGTTCCCTTGGTTAGCTTTTGGCCATATGATTCCTTACCTCGAGCTCGCCAAGCTCATTGCTCAAAAGGGTCACTTCGTCTTCTTCGTTTCCACTCCGCGAAACATCGATCGCCTTCCGCAGCTTCACCCAGATTTATCTACTTTTATTAATTTTGTTAACGCAGAGGCTACTTCTGATCTTCCTTATGACCGTGTGCAGTACCTTAAGAAAGCTTACGACCAGCTCCAGACTCCGATGACCCAGTTTCTGAAATCTTCCCAGTTCGATTGGATTCTCCACGATTTCGCTCCCTATTGGATGCCCACCATTGGAGCACCTTTGGGTATCAAAACAGCGTTTTTGAGCATCTTCACCCCGGAGTTGCTAGGATTTCTGGGTCCTCCTTCAGCTCTACTGAGCGATGATATTGAAAACTGCAACATCGTCGCAGTAAGAGGCTGTGCCGATTTCGAAGGGGAATGGTTTAGAGATTCCGAGTTACCCTTCTTCTGGGTTTTCAGAAGTCGGCGAGGCGCAGTTTCAAATTACAGTAAAGAATTGGAGGAGATGAAACTTGTGACTAAGCAAGAATTCATTGCATCTCTCAGAAGGAAAAGTAGCGGTTTTTCGAGGGGCGCTTCAATTTATCGAGGGGTGACGAGGCACCATCAGCAGGGAAGGTGGCAAGCGAGAATAGGCCGTGTTGCCGGAAATAAGGATCTGTACCTCGGGACCTTTGCCACAGAAGAGGAGGCGGCCGAAGCTTACGACATTGCAGCCATAAAGTTCAGAGGTTTAAATGCGGTGACAAACTTTGAGATGGGACGATACGATGTCGAAGCTATTTCGAAGAGTAATCTACCCATTGGAGGAGCGGCTAAACGGTTAAAGCTCTCACTCGAATCCGAACAAAAGCCGTCTATTTTACACCATAGTTTACAGTCACCGAGACTATGTGCCGGAAACAACATAAGTTTCGGCCCAATTCAGACCGTTCCGGCTATCCCGTATGATGCTTCTACGTCGATGCTTTATCATCACAACCTTTTCCACCACCTCCAGACCAATAGCCTTAGCACTTCCACCTCAACTTCTAACCCTCTAATGGCGACTCCGATGAACCCAATGCCACAGCTGGCAGAGTTTTTTGTCTGGCCCCATCAGTCCTACTGA 1185 47.76 MAETLKLRIVMFPWLAFGHMIPYLELAKLIAQKGHFVFFVSTPRNIDRLPQLHPDLSTFINFVNAEATSDLPYDRVQYLKKAYDQLQTPMTQFLKSSQFDWILHDFAPYWMPTIGAPLGIKTAFLSIFTPELLGFLGPPSALLSDDIENCNIVAVRGCADFEGEWFRDSELPFFWVFRSRRGAVSNYSKELEEMKLVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMGRYDVEAISKSNLPIGGAAKRLKLSLESEQKPSILHHSLQSPRLCAGNNISFGPIQTVPAIPYDASTSMLYHHNLFHHLQTNSLSTSTSTSNPLMATPMNPMPQLAEFFVWPHQSY 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 48349637 48354295 + Bda008415.1 Bda11g01553 16661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01553 394 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 184 390 - -
Bda11g01553 394 ProSiteProfiles AP2/ERF domain profile. 219 277 IPR001471 GO:0003700|GO:0006355
Bda11g01553 394 Gene3D AP2/ERF domain 219 278 IPR036955 GO:0003700|GO:0006355
Bda11g01553 394 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 148 - -
Bda11g01553 394 Pfam AP2 domain 219 269 IPR001471 GO:0003700|GO:0006355
Bda11g01553 394 Gene3D Glycogen Phosphorylase B; 1 207 - -
Bda11g01553 394 SUPERFAMILY DNA-binding domain 218 278 IPR016177 GO:0003677
Bda11g01553 394 SMART rav1_2 219 283 IPR001471 GO:0003700|GO:0006355
Bda11g01553 394 CDD AP2 218 277 IPR001471 GO:0003700|GO:0006355
Bda11g01553 394 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 184 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01553 Bda-Chr11:48349637 Bda07g01133 Bda-Chr7:13478377 5.30E-09 dispersed
Bda11g01553 Bda-Chr11:48349637 Bda11g01555 Bda-Chr11:48388334 1.46E-103 proximal
Bda01g00668 Bda-Chr1:33698071 Bda11g01553 Bda-Chr11:48349637 1.64E-108 transposed
Bda11g01553 Bda-Chr11:48349637 Bda04g00132 Bda-Chr4:3202478 1.54E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16703 PF00847 AP2 1.40E-10 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01553 K09285 - qsu:112018242 291.967