Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g01553 | ATGGCTGAAACCCTCAAGCTTCGTATCGTGATGTTCCCTTGGTTAGCTTTTGGCCATATGATTCCTTACCTCGAGCTCGCCAAGCTCATTGCTCAAAAGGGTCACTTCGTCTTCTTCGTTTCCACTCCGCGAAACATCGATCGCCTTCCGCAGCTTCACCCAGATTTATCTACTTTTATTAATTTTGTTAACGCAGAGGCTACTTCTGATCTTCCTTATGACCGTGTGCAGTACCTTAAGAAAGCTTACGACCAGCTCCAGACTCCGATGACCCAGTTTCTGAAATCTTCCCAGTTCGATTGGATTCTCCACGATTTCGCTCCCTATTGGATGCCCACCATTGGAGCACCTTTGGGTATCAAAACAGCGTTTTTGAGCATCTTCACCCCGGAGTTGCTAGGATTTCTGGGTCCTCCTTCAGCTCTACTGAGCGATGATATTGAAAACTGCAACATCGTCGCAGTAAGAGGCTGTGCCGATTTCGAAGGGGAATGGTTTAGAGATTCCGAGTTACCCTTCTTCTGGGTTTTCAGAAGTCGGCGAGGCGCAGTTTCAAATTACAGTAAAGAATTGGAGGAGATGAAACTTGTGACTAAGCAAGAATTCATTGCATCTCTCAGAAGGAAAAGTAGCGGTTTTTCGAGGGGCGCTTCAATTTATCGAGGGGTGACGAGGCACCATCAGCAGGGAAGGTGGCAAGCGAGAATAGGCCGTGTTGCCGGAAATAAGGATCTGTACCTCGGGACCTTTGCCACAGAAGAGGAGGCGGCCGAAGCTTACGACATTGCAGCCATAAAGTTCAGAGGTTTAAATGCGGTGACAAACTTTGAGATGGGACGATACGATGTCGAAGCTATTTCGAAGAGTAATCTACCCATTGGAGGAGCGGCTAAACGGTTAAAGCTCTCACTCGAATCCGAACAAAAGCCGTCTATTTTACACCATAGTTTACAGTCACCGAGACTATGTGCCGGAAACAACATAAGTTTCGGCCCAATTCAGACCGTTCCGGCTATCCCGTATGATGCTTCTACGTCGATGCTTTATCATCACAACCTTTTCCACCACCTCCAGACCAATAGCCTTAGCACTTCCACCTCAACTTCTAACCCTCTAATGGCGACTCCGATGAACCCAATGCCACAGCTGGCAGAGTTTTTTGTCTGGCCCCATCAGTCCTACTGA | 1185 | 47.76 | MAETLKLRIVMFPWLAFGHMIPYLELAKLIAQKGHFVFFVSTPRNIDRLPQLHPDLSTFINFVNAEATSDLPYDRVQYLKKAYDQLQTPMTQFLKSSQFDWILHDFAPYWMPTIGAPLGIKTAFLSIFTPELLGFLGPPSALLSDDIENCNIVAVRGCADFEGEWFRDSELPFFWVFRSRRGAVSNYSKELEEMKLVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMGRYDVEAISKSNLPIGGAAKRLKLSLESEQKPSILHHSLQSPRLCAGNNISFGPIQTVPAIPYDASTSMLYHHNLFHHLQTNSLSTSTSTSNPLMATPMNPMPQLAEFFVWPHQSY | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 48349637 | 48354295 | + | Bda008415.1 | Bda11g01553 | 16661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g01553 | 394 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 184 | 390 | - | - | |
Bda11g01553 | 394 | ProSiteProfiles | AP2/ERF domain profile. | 219 | 277 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01553 | 394 | Gene3D | AP2/ERF domain | 219 | 278 | IPR036955 | GO:0003700|GO:0006355 | |
Bda11g01553 | 394 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 6 | 148 | - | - | |
Bda11g01553 | 394 | Pfam | AP2 domain | 219 | 269 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01553 | 394 | Gene3D | Glycogen Phosphorylase B; | 1 | 207 | - | - | |
Bda11g01553 | 394 | SUPERFAMILY | DNA-binding domain | 218 | 278 | IPR016177 | GO:0003677 | |
Bda11g01553 | 394 | SMART | rav1_2 | 219 | 283 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01553 | 394 | CDD | AP2 | 218 | 277 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g01553 | 394 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 | 184 | 390 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g01553 | Bda-Chr11:48349637 | Bda07g01133 | Bda-Chr7:13478377 | 5.30E-09 | dispersed | |
Bda11g01553 | Bda-Chr11:48349637 | Bda11g01555 | Bda-Chr11:48388334 | 1.46E-103 | proximal | |
Bda01g00668 | Bda-Chr1:33698071 | Bda11g01553 | Bda-Chr11:48349637 | 1.64E-108 | transposed | |
Bda11g01553 | Bda-Chr11:48349637 | Bda04g00132 | Bda-Chr4:3202478 | 1.54E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16703 | PF00847 | AP2 | 1.40E-10 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g01553 | K09285 | - | qsu:112018242 | 291.967 |