Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01561 ATGAACAGACCTTGCAGCTCTGATTCCTTATCTGCTCTCATGTCTATCTGCCCAGCTACAGAGGATCACAGTCCAAGAAACAACAGCGTTTTCGAAAGGGGATTTCAATCCATGTTTGATGAAGACGACTGTACAGAAGAATCTGGACATGTTTCTGAGAAGAAGAGGCGTTTGGGGTTGGACCAAGTTAAGGCGCTGGAGAAAAACTTCGAGCTGGACAACAAGCTCGAACCGGAGAGAAAAGTGAAGTTAGCTCGAGAGCTTGGGTTGCAACCCAGGCAAGTCGCTGTTTGGTTCCAAAATCGACGAGCCAGATGGAAAACTAAGCAATTAGAGAGAGATTATGGCGCTCTTAAATCTAGTTATGATGCTCTCAAGCTTAAATTCGATACTCTTCGACGCGACAACGAAGGTCTTCTCGAGGAGATTGAGGAAGCGAAAGCTAAGCTGTTTGAAGAAGAGAATACAGAAAGCAATCTCTCAGTGAAAGAAGAAATAACAATGGCGGATTCCACTCGAATCGAGCAAACAAACCCCCCCTCTGATAACCCTCTTCTTGTCGAATCCGAATCCCAAGACTTCCACTACCAGAGTTTCATCAACAACAATGGAGGAGAATCAGGGTACGAAATGTCATTCCTCGCAGGCCATTCGAAAGATGGGTCGTCCGACGAGAGCGATTCAAGCGCAATACTGAACAGTCCAAAGGCGGCCATTTCCTCTCCGCCGGCTCTCTGTAATAACCAGAAACTGGCTTGGTCTTCTTCCGGGAAAACGAAGGACTCGTCATCTTCTGGTTCGTCTCTGAACTAG 813 46.74 MNRPCSSDSLSALMSICPATEDHSPRNNSVFERGFQSMFDEDDCTEESGHVSEKKRRLGLDQVKALEKNFELDNKLEPERKVKLARELGLQPRQVAVWFQNRRARWKTKQLERDYGALKSSYDALKLKFDTLRRDNEGLLEEIEEAKAKLFEEENTESNLSVKEEITMADSTRIEQTNPPSDNPLLVESESQDFHYQSFINNNGGESGYEMSFLAGHSKDGSSDESDSSAILNSPKAAISSPPALCNNQKLAWSSSGKTKDSSSSGSSLN 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 48487533 48488572 + Bda008424.1 Bda11g01561 16669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01561 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 3 268 - -
Bda11g01561 270 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Bda11g01561 270 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Bda11g01561 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 268 IPR045224 GO:0003700
Bda11g01561 270 MobiDBLite consensus disorder prediction 225 270 - -
Bda11g01561 270 Pfam Homeobox associated leucine zipper 109 150 IPR003106 GO:0006355|GO:0043565
Bda11g01561 270 MobiDBLite consensus disorder prediction 210 270 - -
Bda11g01561 270 Coils Coil 122 156 - -
Bda11g01561 270 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Bda11g01561 270 MobiDBLite consensus disorder prediction 152 189 - -
Bda11g01561 270 SMART HOX_1 52 113 IPR001356 GO:0003677
Bda11g01561 270 MobiDBLite consensus disorder prediction 161 189 - -
Bda11g01561 270 Gene3D - 49 116 - -
Bda11g01561 270 SUPERFAMILY Homeodomain-like 43 111 IPR009057 -
Bda11g01561 270 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Bda11g01561 270 CDD homeodomain 54 110 IPR001356 GO:0003677
Bda11g01561 270 Pfam Homeodomain 55 107 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00254 Bda-Chr7:3442887 Bda11g01561 Bda-Chr11:48487533 8.45E-57 dispersed
Bda10g00072 Bda-Chr10:1578941 Bda11g01561 Bda-Chr11:48487533 7.55E-70 dispersed
Bda11g01561 Bda-Chr11:48487533 Bda15g00022 Bda-Chr15:1565106 1.06E-36 dispersed
Bda07g00122 Bda-Chr7:1505487 Bda11g01561 Bda-Chr11:48487533 1.55E-35 transposed
Bda11g01561 Bda-Chr11:48487533 Bda14g01335 Bda-Chr14:15138246 2.10E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16704 PF00046 Homeodomain 9.50E-16 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01561 K09338 - qsu:112039557 278.1