Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01566 ATGAAAAGTGGTTACGTCGAAGAAGTATGCCTTGGAAACTCGATATTAGAAATGTATAGTAAGAGTCAGAAGTTGAAGGAGTGCTTCAAAGCTTTTCATGAAATGCCTTATAAAAATATCTCCTCTTGGACCCAGATGGCTTCAGGGTGCCTAAATTGTGGGGAGCCAAGCAAAGCCCTCGAGGTCATTGCTTTAATGAAAGCCACGGGTTTAAGGCCAAACAAATTTACTGTCGCAACTGCCTTAAACGTGTGTGCCAATTTATCGTCCCTAGAAGAGGGTAAGAAAAACCATGGATTACGAATCAAACTTGGGTCGGAAGTTGATATATGTGTGGATAATGCTTTGCTCGATATGTACTCGAAAAGTGGATGCATGGATAGTGCTCGGGTCGTCTTCAAGTCGATGAGCGATCGTTCCGTTATTTCGTGGACAACGATGATAATGGGTTGTGCTCGAAACGGCCAGGCAAAAGAAGCGCTTATGATTTTCGACGAGATGAGATCGGTGGGTGGTGTCGAGCCGAATTCTATCACTTTCATTTGCTTGTTTTATGCATGTGGCCAAGGAGGATTGGTTAGTGAAGGGAAGGAGTATTTCTCTTCCATGATTACAGATTACGGCATTTCTCCTTCGCAAGAACATTACGCCTGCATCGTCAATCTCTTGGGTCGAGCCGGACATATTAAAAAAGCCGAGGAGTTTATACAGGAAATGCCGGTTAAGCCGGGAGCTTTAATCTGGCAAACTTTGCTCAGTGCTTGTGTATTCCACGGCGAAATAGAATCGGCGAAGCAAGCGGCGAAGCAGGCGTTGGCATTTGACGGAGATGATCCGTCGACTTATGTGGCGTTATCAAATGTTTTTGCGGGGGAGAGTGATTGGGAAAATGTTGGATTGTTGAGAGAAGCAATGGAGGCCATGGATGTAAGGAAATCAGCTGGGTCTAGTTGGATTGGTGTTGGAAAGAACCACCTTCCTATTGATCTAGTTCTAGGCCAGGATGAACAGAAATGA 1017 44.84 MKSGYVEEVCLGNSILEMYSKSQKLKECFKAFHEMPYKNISSWTQMASGCLNCGEPSKALEVIALMKATGLRPNKFTVATALNVCANLSSLEEGKKNHGLRIKLGSEVDICVDNALLDMYSKSGCMDSARVVFKSMSDRSVISWTTMIMGCARNGQAKEALMIFDEMRSVGGVEPNSITFICLFYACGQGGLVSEGKEYFSSMITDYGISPSQEHYACIVNLLGRAGHIKKAEEFIQEMPVKPGALIWQTLLSACVFHGEIESAKQAAKQALAFDGDDPSTYVALSNVFAGESDWENVGLLREAMEAMDVRKSAGSSWIGVGKNHLPIDLVLGQDEQK 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 48750877 48751893 - Bda008432.1 Bda11g01566 16674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01566 338 Gene3D Tetratricopeptide repeat domain 1 99 IPR011990 GO:0005515
Bda11g01566 338 Pfam E motif 258 319 IPR046848 -
Bda11g01566 338 Pfam PPR repeat family 140 187 IPR002885 -
Bda11g01566 338 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 321 - -
Bda11g01566 338 Pfam PPR repeat 216 240 IPR002885 -
Bda11g01566 338 Pfam PPR repeat 114 139 IPR002885 -
Bda11g01566 338 Pfam PPR repeat 13 39 IPR002885 -
Bda11g01566 338 Pfam PPR repeat 42 68 IPR002885 -
Bda11g01566 338 Gene3D Tetratricopeptide repeat domain 170 337 IPR011990 GO:0005515
Bda11g01566 338 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 39 73 IPR002885 -
Bda11g01566 338 Gene3D Tetratricopeptide repeat domain 100 169 IPR011990 GO:0005515
Bda11g01566 338 TIGRFAM PPR: pentatricopeptide repeat domain 42 74 IPR002885 -
Bda11g01566 338 TIGRFAM PPR: pentatricopeptide repeat domain 114 140 IPR002885 -
Bda11g01566 338 TIGRFAM PPR: pentatricopeptide repeat domain 178 212 IPR002885 -
Bda11g01566 338 TIGRFAM PPR: pentatricopeptide repeat domain 142 176 IPR002885 -
Bda11g01566 338 PANTHER - 1 321 - -
Bda11g01566 338 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01566 - - - jre:109000222 447.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01566 Bda-Chr11:48750877 Bda05g00676 Bda-Chr5:55067841 3.72E-15 dispersed
Bda11g01566 Bda-Chr11:48750877 Bda08g00065 Bda-Chr8:527492 1.93E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01566 Bda_Chr11 FPKM 4.917845 6.718019 5.860081 5.959386 3.008084 4.384594 3.049693 10.59882 8.715735