Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01570 ATGCAGTTATCATTTTCTGCTTCCAACTTGACTGATCGAGATGCAACTTCCAAGAGTGATCCAGTGCTAGTTGTTTTTTCAAAAGGAAGAGATGGAGCACTAAAAGAGCTTGGCCGCACTGAGATAATTATAGATTCACCAAATCCCAAATGGACCTCCACACTTACTATGATTTATCATTTTGAAGTTGTTCAGATGCTGATGTTTCGGGTGTACGATGTTGACTCTGTCTTTCACAGTGCAGATGTCAAGATGCTGAAACTTGATGAGCAGCTTTATCTTGGAGAAGCAACTTGTGCATTAGCTGAGATAGTTAGTAAATCAGATAGGTCTCTGACATTAGATGTTGTGGATGTTGAGGAGCCTATGAGATCAAAGGATTCTGTTTATTGCGGAAAGCTTATCATCCATGCTGAGGAATGTGTTAGCTCCAAGACTACCGTGGAGTTAATGTTAAGGTGTACCAATTTGGAACACAAGGATCTCTTTTCAAGAAGTGACCCATTTTTAATAATATCGAAGTTTGTGGACAGTAAGATTCCAATTCCACTGTGCAAAACAGAAGTCATAAAGAATGATCAAAGTCCATCATGGAAGTCAGTATACTTGACTATCCAACAAGTTGGAAGCAAGGACAGTCCATTATTAATTGAGTGCTTTAACTTCAACAGCAATGGAAAACATGATTTGATTGGAAAAGTTCAACTATCAATAGCAGAGTTGGAAAAGCTTTTTATCAGTGGACAAGGAGCCAATTTATTTTTACCGGACGTTGTTGGACATGATTATGATGGCAAAATACTAAAGAGCCAGCTATTTGTGGATAAGTTTTCTGAGGGTATCCAACAAACGTTCCTGGATTACCTGGTCAAGGGATGTGAAATGAACTTCATGGTGGCTGTTGATTTTACAGCATCTAATGGAAACCCCCGTCTCCCTGATTCCTTGCATTTCATTGACCCTTCAGGACGACCCAATGCATACCAGAAGGCTATTTTGGAAGTTGGAGAGGTGTTGCAGTTTTATAATTCTAGAAAGCGTTTTCCAGCGTGGGGATTTGGAGCTCGACCAATTGATGGTCCAGTCTCTCATTGTTTCAATCTGAATGGAAGTAATCACCAATGTGAGGTTGAAGGAATCCAAGGCATAATGATGGCTTATGCAAGTGCTCTGCTTAATGTATCTCTTGCTGGGCCAACTCTTTTCGAACCAGTTATTAGCAATGCTGCTCAAATTGCCAGCCAATCTCTTGCAAATGACAGACCGAAATACTTCATTTTGTTGATAATCACGGATGGAGTAGTGACAGACCTCCAAGAAACTAAAGATGCCATTGTAAAGGCTTCTGATCTTCCATTGTCAATTCTCATTTTTGGAGTTGGTGGAGCAGATTTTAAAGAAATGGAGGTGTTCGATGCAGATAAGGGAGAGGCGCTTGAAAACTCAATGGGTCGTGTCGCTTCCGGCAATATAGTTCAGTTTATTCCGTTTCAAAATCTGCAGTGTGGGGAGACTTCTCCCATCGTTCAAGTGCTTCTAGCTGAATTACCAGCCCGATTTCTTAGCTACTTGAGAAGTAGAAACATTCAACCAAACTAG 1599 40.59 MQLSFSASNLTDRDATSKSDPVLVVFSKGRDGALKELGRTEIIIDSPNPKWTSTLTMIYHFEVVQMLMFRVYDVDSVFHSADVKMLKLDEQLYLGEATCALAEIVSKSDRSLTLDVVDVEEPMRSKDSVYCGKLIIHAEECVSSKTTVELMLRCTNLEHKDLFSRSDPFLIISKFVDSKIPIPLCKTEVIKNDQSPSWKSVYLTIQQVGSKDSPLLIECFNFNSNGKHDLIGKVQLSIAELEKLFISGQGANLFLPDVVGHDYDGKILKSQLFVDKFSEGIQQTFLDYLVKGCEMNFMVAVDFTASNGNPRLPDSLHFIDPSGRPNAYQKAILEVGEVLQFYNSRKRFPAWGFGARPIDGPVSHCFNLNGSNHQCEVEGIQGIMMAYASALLNVSLAGPTLFEPVISNAAQIASQSLANDRPKYFILLIITDGVVTDLQETKDAIVKASDLPLSILIFGVGGADFKEMEVFDADKGEALENSMGRVASGNIVQFIPFQNLQCGETSPIVQVLLAELPARFLSYLRSRNIQPN 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 48868183 48873408 - Bda008439.1 Bda11g01570 16678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01570 532 Gene3D C2 domain 4 139 IPR035892 -
Bda11g01570 532 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 2 531 - -
Bda11g01570 532 SUPERFAMILY vWA-like 293 477 IPR036465 -
Bda11g01570 532 CDD C2B_Copine 148 243 IPR037768 -
Bda11g01570 532 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 114 IPR035892 -
Bda11g01570 532 CDD C2A_Copine 2 115 - -
Bda11g01570 532 SMART C2_3c 151 250 IPR000008 -
Bda11g01570 532 SMART C2_3c 2 113 IPR000008 -
Bda11g01570 532 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
Bda11g01570 532 SMART VWA_4 294 490 IPR002035 -
Bda11g01570 532 Pfam C2 domain 152 242 IPR000008 -
Bda11g01570 532 Pfam C2 domain 6 110 IPR000008 -
Bda11g01570 532 Gene3D C2 domain 150 267 IPR035892 -
Bda11g01570 532 ProSiteProfiles C2 domain profile. 130 255 IPR000008 -
Bda11g01570 532 Pfam Copine 315 531 IPR010734 -
Bda11g01570 532 PANTHER COPINE 2 531 IPR045052 GO:0005544
Bda11g01570 532 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 152 241 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01570 - - - qsu:112013968 809.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01494 Bda-Chr11:23146561 Bda11g01570 Bda-Chr11:48868183 0 dispersed
Bda11g01570 Bda-Chr11:48868183 Bda12g00395 Bda-Chr12:4687693 0 dispersed
Bda11g01570 Bda-Chr11:48868183 Bda07g01646 Bda-Chr7:30685341 3.59E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01570 Bda_Chr11 FPKM 0.55633 0.410043 0.0 0.537142 1.078315 0.429773 0.711435 0.419173 0.275205