Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g01574 | ATGGATTTATCTGATGTATCGGTCAAAGGAAATTGCGAGAACGGAAGGGGAGAGTGCTTCTCCTCTGGTTTGAAGGAACACAGCGACGCGAAGATCGGCAAGGATGGGCAGAAAGGCCATTCAGCTTCTGCTAAAGATACTGAAACAGCTCTCTACACAGAGCTCTGGCATGCTTGTGCTGGTCCTTTGGTGACTGTGCCTCGTCAAAACGAGCGCGTCTTTTACTTTCCTCAAGGTCACATCGAGCAGGTGGAGGCATCTACGAATCAGGTGGCAGATCAGCAGATGCCTGTATATGATCTTCCGCACAAAATCCTCTGCCGAGTGGCTAATGTAGAATTGAAGGCTGAACCAGATTCAGATGAGGTCTTTGCCCAAGTTACCTTGCTTCCAGAACCGAATCAAGATGAGAATGCCGTGGAAAAGGAGTCTCTTCCACCTCCTTCCTCGCGATTTCATGTACAGTCATTTTGCAAAACTCTTACGGCCTCAGATACTAGTACACATGGTGGATTTTCTGTCCTGAGGAGGCATGCAGATGAATGCCTTCCGCCCCTGGACATGTCACGGCAGCCTCCTACTCAGGAACTGGTGACAAAGGATTTGCATGGGAACGAATGGCGCTTTCGGCATATTTTTCGGGGTCAACCAAGAAGGCATTTGCTTCAAAGTGGTTGGAGTGTATTTGTCAGCTCCAAGAGACTTGTCGCAGGAGATGCATTCATTTTTTTAAGGGGTGAGAATGGAGAACTTCGTGTTGGTGTTAGACGGGCAATGAGACAGCAGGGTAACATCCCATCATCTGTCATATCCAGTCATAGTATGCACCTTGGTGTCCTTGCAACTGCTTGGCATGCAATTTCAACTGGAACCATGTTTACTGTTTATTACAAGCCTAGGATAAGTCCTTCAGAATTCATTGTTCCATATGAGCAATACATGGAATCTATGAAGAAGACTTACTCAATCGGCATGAGATTCAAAATGAGATTTGAAGGAGAAGAAGCTCCAGAACAGAGATTCACTGGTACTGTTGTTGGAATTGAAGATTCTGATCCCAAAAAGTGGAGAGGCTCCAAGTGGAGATGCCTTAAGGTGAGATGGGACGAGACTTCTACCATTCCTCGTCCTGATAGAGTGTCTCCGTGGAAAATTGAACCTGCTCTTACTCCTCCAGCGTTAAATCCTATGCCAGTGCCTAGGCCAAAAAGGCCGCGATCGAACATGGTTCCCACGTCCTCCGAGTCCTCGGTCCTTACTAGGGACGGTTCATCTAGAGTAGACCCTCCTCCAGCAAGTGGGTTTTCAAGGGTCTTGCAAGGTCAAGATTTTTCAATCTTGAGAGACAACATTATCGAAAGTAACGAATGTGAAGCTGCAGAGAAGTCTGTTGTTTGGCCATCTTCACTTGATGATGAGAAGACTGATATGATATCTGCTTCAAGGAGATTTAGAGCAGAGAACTGGGCTCCTTCTGGAAGCAGTGAACCAACCTACACAGATTTGTTATCGGGTTTTGGGACTAATGGAGAATATTCCCATGGGGTTCCTTCTACATTTGCTGATCCAATAGTTCGAACTACCAACTCTGTGAGAAAACATGTACTTGGTCAGGATGGTAAGTCCACCGTTCTTGGCAACCCATGGCCCGTAATATCTTCTGGTCTCTCACTCACATTAGCAGACTCTAATCAGAAGGGTTCTGTTTGTGCTGGTGATATCTCATTTCAAGCACGGGTGAATAACAGATATGGCAACCTTCTCAATAATCATACCATACTTGAGGGCCAGAAATTTGAAAATTCCCCTAGCTGTTGGCTGATGCCTCCGCCATTGCCATCTAATCTCGATAATTCAGTTATTGCAAGAGAGCAAAGGGGAAAAAGCATATTGGCACAGAAGCAGGAGGCTGTGAAACCCAAAGATGGGAATTGCAAGATCTTTGGTATTTCCCTCATCAGGAACCCTGTGACACCAGGTCCTGCAGTATCAAACAGAGAAATTATTAACGAGCCAGTTATTCAGATGCACCAGATTCCACCAGATTATACCTGTGAACAAAAGTCTGAAGAGCAGAAATGCCCGGCATCTGCTGGTAATTGGCTTGCTGCTAATGAACCTGGCAAACAACCACAAACCAGTGAAATACATGCAAGGGATGTTCAAAGTAAAGGGCATAGTGGGTCATCTAGGAGTTGTACTAAGGTCCATAAGCAGGGTATTGCACTTGGAAGGTCAGTGGATCTGAGTAAGTTCAACAACTATGATGAACTTATTGCTGATTTGGATGAGTTGTTTGAATTTGGGGGTGAGTTAGCTGCTCCGACAAAGAATTGGCTTATTGTTTACACCGATGATGAAGGTGACATGATGCTTGTTGGAGATGATCCGTGGCAGGAATTTTGTGGCATGGTTCGCAAAATTTTTATATATACCAGAGAGGAGGTTCAAAGGATGAATCCAGGGTCCTTAACTATGAAAGCGGAGGAGTCTACATCAGTTGAAGTTGAAGATTCAAATGAGGCTAAATGTCAGCCTTTATCTTCAGCAGAAATCTCGTAG | 2562 | 45.2 | MDLSDVSVKGNCENGRGECFSSGLKEHSDAKIGKDGQKGHSASAKDTETALYTELWHACAGPLVTVPRQNERVFYFPQGHIEQVEASTNQVADQQMPVYDLPHKILCRVANVELKAEPDSDEVFAQVTLLPEPNQDENAVEKESLPPPSSRFHVQSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVTKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNIPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRISPSEFIVPYEQYMESMKKTYSIGMRFKMRFEGEEAPEQRFTGTVVGIEDSDPKKWRGSKWRCLKVRWDETSTIPRPDRVSPWKIEPALTPPALNPMPVPRPKRPRSNMVPTSSESSVLTRDGSSRVDPPPASGFSRVLQGQDFSILRDNIIESNECEAAEKSVVWPSSLDDEKTDMISASRRFRAENWAPSGSSEPTYTDLLSGFGTNGEYSHGVPSTFADPIVRTTNSVRKHVLGQDGKSTVLGNPWPVISSGLSLTLADSNQKGSVCAGDISFQARVNNRYGNLLNNHTILEGQKFENSPSCWLMPPPLPSNLDNSVIAREQRGKSILAQKQEAVKPKDGNCKIFGISLIRNPVTPGPAVSNREIINEPVIQMHQIPPDYTCEQKSEEQKCPASAGNWLAANEPGKQPQTSEIHARDVQSKGHSGSSRSCTKVHKQGIALGRSVDLSKFNNYDELIADLDELFEFGGELAAPTKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQRMNPGSLTMKAEESTSVEVEDSNEAKCQPLSSAEIS | 853 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 48941667 | 48946081 | + | Bda008444.1 | Bda11g01574 | 16682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g01574 | 853 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 37 | 838 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Bda11g01574 | 853 | Pfam | Auxin response factor | 283 | 365 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Bda11g01574 | 853 | Pfam | B3 DNA binding domain | 157 | 258 | IPR003340 | GO:0003677 | |
Bda11g01574 | 853 | MobiDBLite | consensus disorder prediction | 838 | 853 | - | - | |
Bda11g01574 | 853 | CDD | B3_DNA | 156 | 257 | IPR003340 | GO:0003677 | |
Bda11g01574 | 853 | Gene3D | - | 154 | 259 | IPR015300 | - | |
Bda11g01574 | 853 | SUPERFAMILY | DNA-binding pseudobarrel domain | 154 | 286 | IPR015300 | - | |
Bda11g01574 | 853 | MobiDBLite | consensus disorder prediction | 389 | 405 | - | - | |
Bda11g01574 | 853 | SMART | B3_2 | 157 | 259 | IPR003340 | GO:0003677 | |
Bda11g01574 | 853 | Pfam | AUX/IAA family | 778 | 815 | IPR033389 | - | |
Bda11g01574 | 853 | MobiDBLite | consensus disorder prediction | 705 | 733 | - | - | |
Bda11g01574 | 853 | MobiDBLite | consensus disorder prediction | 822 | 853 | - | - | |
Bda11g01574 | 853 | Gene3D | - | 727 | 820 | - | - | |
Bda11g01574 | 853 | Gene3D | - | 320 | 390 | - | - | |
Bda11g01574 | 853 | MobiDBLite | consensus disorder prediction | 383 | 435 | - | - | |
Bda11g01574 | 853 | ProSiteProfiles | PB1 domain profile. | 731 | 815 | IPR000270 | GO:0005515 | |
Bda11g01574 | 853 | SUPERFAMILY | CAD & PB1 domains | 730 | 808 | - | - | |
Bda11g01574 | 853 | MobiDBLite | consensus disorder prediction | 407 | 423 | - | - | |
Bda11g01574 | 853 | PANTHER | AUXIN RESPONSE FACTOR 2 | 37 | 838 | - | - | |
Bda11g01574 | 853 | ProSiteProfiles | B3 DNA-binding domain profile. | 157 | 259 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00770 | Bda-Chr2:48437939 | Bda11g01574 | Bda-Chr11:48941667 | 5.42E-29 | dispersed | |
Bda09g01238 | Bda-Chr9:43825008 | Bda11g01574 | Bda-Chr11:48941667 | 6.51E-105 | dispersed | |
Bda10g01146 | Bda-Chr10:45519615 | Bda11g01574 | Bda-Chr11:48941667 | 3.02E-37 | dispersed | |
Bda11g01574 | Bda-Chr11:48941667 | Bda12g00280 | Bda-Chr12:3024876 | 8.59E-15 | dispersed | |
Bda11g01574 | Bda-Chr11:48941667 | Bda06g00159 | Bda-Chr6:2298415 | 3.26E-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16707 | PF02362 | B3 | 4.00E-21 | CL0405 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g01574 | - | - | vvi:100268072 | 1220.3 |