Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01574 ATGGATTTATCTGATGTATCGGTCAAAGGAAATTGCGAGAACGGAAGGGGAGAGTGCTTCTCCTCTGGTTTGAAGGAACACAGCGACGCGAAGATCGGCAAGGATGGGCAGAAAGGCCATTCAGCTTCTGCTAAAGATACTGAAACAGCTCTCTACACAGAGCTCTGGCATGCTTGTGCTGGTCCTTTGGTGACTGTGCCTCGTCAAAACGAGCGCGTCTTTTACTTTCCTCAAGGTCACATCGAGCAGGTGGAGGCATCTACGAATCAGGTGGCAGATCAGCAGATGCCTGTATATGATCTTCCGCACAAAATCCTCTGCCGAGTGGCTAATGTAGAATTGAAGGCTGAACCAGATTCAGATGAGGTCTTTGCCCAAGTTACCTTGCTTCCAGAACCGAATCAAGATGAGAATGCCGTGGAAAAGGAGTCTCTTCCACCTCCTTCCTCGCGATTTCATGTACAGTCATTTTGCAAAACTCTTACGGCCTCAGATACTAGTACACATGGTGGATTTTCTGTCCTGAGGAGGCATGCAGATGAATGCCTTCCGCCCCTGGACATGTCACGGCAGCCTCCTACTCAGGAACTGGTGACAAAGGATTTGCATGGGAACGAATGGCGCTTTCGGCATATTTTTCGGGGTCAACCAAGAAGGCATTTGCTTCAAAGTGGTTGGAGTGTATTTGTCAGCTCCAAGAGACTTGTCGCAGGAGATGCATTCATTTTTTTAAGGGGTGAGAATGGAGAACTTCGTGTTGGTGTTAGACGGGCAATGAGACAGCAGGGTAACATCCCATCATCTGTCATATCCAGTCATAGTATGCACCTTGGTGTCCTTGCAACTGCTTGGCATGCAATTTCAACTGGAACCATGTTTACTGTTTATTACAAGCCTAGGATAAGTCCTTCAGAATTCATTGTTCCATATGAGCAATACATGGAATCTATGAAGAAGACTTACTCAATCGGCATGAGATTCAAAATGAGATTTGAAGGAGAAGAAGCTCCAGAACAGAGATTCACTGGTACTGTTGTTGGAATTGAAGATTCTGATCCCAAAAAGTGGAGAGGCTCCAAGTGGAGATGCCTTAAGGTGAGATGGGACGAGACTTCTACCATTCCTCGTCCTGATAGAGTGTCTCCGTGGAAAATTGAACCTGCTCTTACTCCTCCAGCGTTAAATCCTATGCCAGTGCCTAGGCCAAAAAGGCCGCGATCGAACATGGTTCCCACGTCCTCCGAGTCCTCGGTCCTTACTAGGGACGGTTCATCTAGAGTAGACCCTCCTCCAGCAAGTGGGTTTTCAAGGGTCTTGCAAGGTCAAGATTTTTCAATCTTGAGAGACAACATTATCGAAAGTAACGAATGTGAAGCTGCAGAGAAGTCTGTTGTTTGGCCATCTTCACTTGATGATGAGAAGACTGATATGATATCTGCTTCAAGGAGATTTAGAGCAGAGAACTGGGCTCCTTCTGGAAGCAGTGAACCAACCTACACAGATTTGTTATCGGGTTTTGGGACTAATGGAGAATATTCCCATGGGGTTCCTTCTACATTTGCTGATCCAATAGTTCGAACTACCAACTCTGTGAGAAAACATGTACTTGGTCAGGATGGTAAGTCCACCGTTCTTGGCAACCCATGGCCCGTAATATCTTCTGGTCTCTCACTCACATTAGCAGACTCTAATCAGAAGGGTTCTGTTTGTGCTGGTGATATCTCATTTCAAGCACGGGTGAATAACAGATATGGCAACCTTCTCAATAATCATACCATACTTGAGGGCCAGAAATTTGAAAATTCCCCTAGCTGTTGGCTGATGCCTCCGCCATTGCCATCTAATCTCGATAATTCAGTTATTGCAAGAGAGCAAAGGGGAAAAAGCATATTGGCACAGAAGCAGGAGGCTGTGAAACCCAAAGATGGGAATTGCAAGATCTTTGGTATTTCCCTCATCAGGAACCCTGTGACACCAGGTCCTGCAGTATCAAACAGAGAAATTATTAACGAGCCAGTTATTCAGATGCACCAGATTCCACCAGATTATACCTGTGAACAAAAGTCTGAAGAGCAGAAATGCCCGGCATCTGCTGGTAATTGGCTTGCTGCTAATGAACCTGGCAAACAACCACAAACCAGTGAAATACATGCAAGGGATGTTCAAAGTAAAGGGCATAGTGGGTCATCTAGGAGTTGTACTAAGGTCCATAAGCAGGGTATTGCACTTGGAAGGTCAGTGGATCTGAGTAAGTTCAACAACTATGATGAACTTATTGCTGATTTGGATGAGTTGTTTGAATTTGGGGGTGAGTTAGCTGCTCCGACAAAGAATTGGCTTATTGTTTACACCGATGATGAAGGTGACATGATGCTTGTTGGAGATGATCCGTGGCAGGAATTTTGTGGCATGGTTCGCAAAATTTTTATATATACCAGAGAGGAGGTTCAAAGGATGAATCCAGGGTCCTTAACTATGAAAGCGGAGGAGTCTACATCAGTTGAAGTTGAAGATTCAAATGAGGCTAAATGTCAGCCTTTATCTTCAGCAGAAATCTCGTAG 2562 45.2 MDLSDVSVKGNCENGRGECFSSGLKEHSDAKIGKDGQKGHSASAKDTETALYTELWHACAGPLVTVPRQNERVFYFPQGHIEQVEASTNQVADQQMPVYDLPHKILCRVANVELKAEPDSDEVFAQVTLLPEPNQDENAVEKESLPPPSSRFHVQSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVTKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNIPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRISPSEFIVPYEQYMESMKKTYSIGMRFKMRFEGEEAPEQRFTGTVVGIEDSDPKKWRGSKWRCLKVRWDETSTIPRPDRVSPWKIEPALTPPALNPMPVPRPKRPRSNMVPTSSESSVLTRDGSSRVDPPPASGFSRVLQGQDFSILRDNIIESNECEAAEKSVVWPSSLDDEKTDMISASRRFRAENWAPSGSSEPTYTDLLSGFGTNGEYSHGVPSTFADPIVRTTNSVRKHVLGQDGKSTVLGNPWPVISSGLSLTLADSNQKGSVCAGDISFQARVNNRYGNLLNNHTILEGQKFENSPSCWLMPPPLPSNLDNSVIAREQRGKSILAQKQEAVKPKDGNCKIFGISLIRNPVTPGPAVSNREIINEPVIQMHQIPPDYTCEQKSEEQKCPASAGNWLAANEPGKQPQTSEIHARDVQSKGHSGSSRSCTKVHKQGIALGRSVDLSKFNNYDELIADLDELFEFGGELAAPTKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQRMNPGSLTMKAEESTSVEVEDSNEAKCQPLSSAEIS 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 48941667 48946081 + Bda008444.1 Bda11g01574 16682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01574 853 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 838 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda11g01574 853 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bda11g01574 853 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Bda11g01574 853 MobiDBLite consensus disorder prediction 838 853 - -
Bda11g01574 853 CDD B3_DNA 156 257 IPR003340 GO:0003677
Bda11g01574 853 Gene3D - 154 259 IPR015300 -
Bda11g01574 853 SUPERFAMILY DNA-binding pseudobarrel domain 154 286 IPR015300 -
Bda11g01574 853 MobiDBLite consensus disorder prediction 389 405 - -
Bda11g01574 853 SMART B3_2 157 259 IPR003340 GO:0003677
Bda11g01574 853 Pfam AUX/IAA family 778 815 IPR033389 -
Bda11g01574 853 MobiDBLite consensus disorder prediction 705 733 - -
Bda11g01574 853 MobiDBLite consensus disorder prediction 822 853 - -
Bda11g01574 853 Gene3D - 727 820 - -
Bda11g01574 853 Gene3D - 320 390 - -
Bda11g01574 853 MobiDBLite consensus disorder prediction 383 435 - -
Bda11g01574 853 ProSiteProfiles PB1 domain profile. 731 815 IPR000270 GO:0005515
Bda11g01574 853 SUPERFAMILY CAD & PB1 domains 730 808 - -
Bda11g01574 853 MobiDBLite consensus disorder prediction 407 423 - -
Bda11g01574 853 PANTHER AUXIN RESPONSE FACTOR 2 37 838 - -
Bda11g01574 853 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00770 Bda-Chr2:48437939 Bda11g01574 Bda-Chr11:48941667 5.42E-29 dispersed
Bda09g01238 Bda-Chr9:43825008 Bda11g01574 Bda-Chr11:48941667 6.51E-105 dispersed
Bda10g01146 Bda-Chr10:45519615 Bda11g01574 Bda-Chr11:48941667 3.02E-37 dispersed
Bda11g01574 Bda-Chr11:48941667 Bda12g00280 Bda-Chr12:3024876 8.59E-15 dispersed
Bda11g01574 Bda-Chr11:48941667 Bda06g00159 Bda-Chr6:2298415 3.26E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16707 PF02362 B3 4.00E-21 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01574 - - vvi:100268072 1220.3