Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01579 ATGGCTTGGAGAGTGTTGAAGGCTTTACAGGCACTGGTGGCCCACAGTTCTCTGTTTTGTTTCACGCTTCTGCTCGTTTTCAAGCTCGATCACGACGTGTTCTATAGTTGGTGGATAATATTTTTGCCTCTGTGGGCATTTCACGCAGTCGTTGCTCGAGGAAGATTCTCATTACCTGCTCCATCGATTCCACATAATCGCAATTGGGCACCTTGCCATACGGTTGTTGCCACTACCTTGCTTATCGCATTTGAGTTGCTTCTCTGTATATATCTTGAGATACATGGTTTTGCAGCAGTCGGTTTGAAGATTGTTTTTCTTCCATTATTGGCATTTGAAATGACTATTCTAATTGATAATTTCAGAATGTGTAGGGCTCTTATGCCGGGAGATAATGAAGGCTTGAGCTATGAGGCTATATGGGAAACTCTTACACACTTCTGGGTGGTGATTTCCATGATCTTCTTAGTCGCTGCTACAATCCTCACCCTCCTGAATCTCTGTGGCGATGTTGGCGCTCTCAGTTGGTGGGACTTATTTATAAATTTTGGTATTGCTGAGTGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCTAACCCTATTATTCATAGAAATTCTTCCAGTAGAGAAGCCACTTCTTCTTCTTCTTTGATTATTAGATATCTAGATTGGGGTAGCGGATTAATACTCTCCCCCCAGCAAGATGAGCAGCAAGATAGAATGTGTGGCCTTCGAGACATTGGAGGCCACATGGGACAAATTGCTAATGCAATCACGGTGAGACCTCAGGGCACACTGCCAAGCTCAACTGAAGTAAATCCAAAAGAACAGTGTAATGCTATCACCCTGTGGAGCGGAGCAGTGATTGACAATTCAAATCCGGAGAAAAAGAGAGAAAATGAGAAAGACAAGCAAGACAAGGAAAAACCAGCGTTTTCAACACTACCAAGAAGACCTGAAGATCAGAAGAAACTCAAAACCCCTCAGCCGAGCATTCCGGTGGACTTAACACGGGTTCCGTTTCCACAACGCTTAATGAATCCGGAAGCCAACAAGCAGCTCGAGAAATTTCGAAAAATATTTAAAAAACTGCGCATCAATATTCCATTCGCCGAAGCCCTAAAGCAGATGCTTAGACACGCAAAATCCATGAAGGAAATCTTATCTCATAAGCGCAAAATCGACGACTGCGAAATAATACCTTTGACAGAAGAGTGCAGTGCAATTATTCAACAGAAGTTACCACAGAAATTGAAAGATCCGGGAAGTTTTACTGTTCCGTGCACTATTGGCGATTCCACCTTCGAGCGAGCTCTATGTGATTTGGGCGCCAGCATTAATCTCATGTCTCTCTCTATTTTCTCGAAGCTCGGACTGGGGGAAGCTAAGCCTACCAGAATTAGACTTCAAATGGCGGACCGTTCCATCAAATACCCACGCGGCATAATAGAAGATGTACTTGTAAAGGTGGACAAATTCATCTTTCCGGTGGATTTCGTCGTCTTAGACATGGAAGAAGACCATAATATTCCGCTTATTTTGGGCCGACCATTCTTAGCAACTGGAGGCGCACTTATTGACGTTCAACGAGGAGAACTTAAATTAAGGGTGCAAGATGAGGAATTGACCTTCAATGTTTTCAATGCCATGAAGTACCCCAAGAAGAGTGATATCCCTGTCACTCACATCCCGCCGGGCACCTAA 1704 43.84 MAWRVLKALQALVAHSSLFCFTLLLVFKLDHDVFYSWWIIFLPLWAFHAVVARGRFSLPAPSIPHNRNWAPCHTVVATTLLIAFELLLCIYLEIHGFAAVGLKIVFLPLLAFEMTILIDNFRMCRALMPGDNEGLSYEAIWETLTHFWVVISMIFLVAATILTLLNLCGDVGALSWWDLFINFGIAECFAFLVCTKWSNPIIHRNSSSREATSSSSLIIRYLDWGSGLILSPQQDEQQDRMCGLRDIGGHMGQIANAITVRPQGTLPSSTEVNPKEQCNAITLWSGAVIDNSNPEKKRENEKDKQDKEKPAFSTLPRRPEDQKKLKTPQPSIPVDLTRVPFPQRLMNPEANKQLEKFRKIFKKLRINIPFAEALKQMLRHAKSMKEILSHKRKIDDCEIIPLTEECSAIIQQKLPQKLKDPGSFTVPCTIGDSTFERALCDLGASINLMSLSIFSKLGLGEAKPTRIRLQMADRSIKYPRGIIEDVLVKVDKFIFPVDFVVLDMEEDHNIPLILGRPFLATGGALIDVQRGELKLRVQDEELTFNVFNAMKYPKKSDIPVTHIPPGT 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49021074 49027839 - Bda008450.1 Bda11g01579 16687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01579 567 CDD retropepsin_like 426 520 - -
Bda11g01579 567 MobiDBLite consensus disorder prediction 289 336 - -
Bda11g01579 567 Pfam Aspartyl protease 426 518 - -
Bda11g01579 567 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 254 - -
Bda11g01579 567 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 4 254 - -
Bda11g01579 567 MobiDBLite consensus disorder prediction 292 325 - -
Bda11g01579 567 Gene3D Acid Proteases 401 546 IPR021109 -
Bda11g01579 567 Pfam Transmembrane Fragile-X-F protein 28 228 IPR019396 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01579 Bda-Chr11:49021074 Bda14g00286 Bda-Chr14:1951605 1.89E-167 dispersed
Bda15g00656 Bda-Chr15:10037769 Bda11g01579 Bda-Chr11:49021074 2.92E-111 dispersed
Bda11g01579 Bda-Chr11:49021074 Bda06g00490 Bda-Chr6:6944810 4.14E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01579 - - zju:107418850 417.157