Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01586 ATGGCTGCTTGTATTTCAGGGTCTGTGGGGGTATGCCTTCCATGCGCTCTCAAGCTTTCCGCCAGACCAACTTCGCGCTCTTCCGCTGTTTGCTCTGTCAAAATGGCGGTGTCCCTCGACGAGAAGAAGAAGAATTTCACCTTGAAAAAGTCTGAGGAGGCTTTCAATGCTGCTAAGGAGCTTATGCCAGGAGGAGTGAATTCCCCTGTTCGTGCCTTTAAATCTGTTGGCGGACAACCGATAGTAATTGACAGCGTCAAAGGGTCCCATATGTGGGATATAGATGGAAATGAATACATAGACTATGTTGGTTCTTGGGGACCGGCAATAATCGGACACGCAGATGATGAGATACTTGCAGCCCTTGCTGAAACAATGAAGAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAAAATGTTTTGGCAGAGATGGTGATATCGGCCGTACCAAGTATGGAAATGGTTCGGTTTGTTAACTCAGGAACTGAAGCGTGCATGGGAGTGCTACGCCTAGCCCGTGCTTTCACCGGAAAACAGAAGATCATCAAATTTGAGGGCTGCTACCACGGTCATGCAGATCCATTTCTTGTCAAGGCCGGGAGTGGAGTTGCTACATTAGGCCTTCCCGACTCTCCGGGCGTTCCGAAGGCAGCTACCTCAGAGACTCTAACAGCCCCATACAATGATTTTTCTGCAGTGGAGGATCTATTCAAAACCCACAAAGGAGAAATTGCAACAATTATACTCGAACCGGTTGTTGGAAACTCCGGTTTCATTCCCCCAAGTCCTGATTTTCTCAATGCCATACGCAAAATCACCAAAGAAAACGACGCTCTTCTCATCTTCGACGAGGTTATGACAGGGTTCCGCATATCTTACGGCGGAGCTCAGGAGTACTTTAAAATAACTCCAGATTTGACTACTTTGGGGAAGATAATCGGAGGTGGATTACCAGTAGGAGCATATGGAGGGAGGAAAGAGATAATGGAGATGGTGGCTCCGGCCGGACCCATGTACCAAGCCGGGACCTTGAGTGGAAACCCATTAGCAATGACTGCTGGTATACATACCCTGAAGAGGCTGAAGGAAGCTGGAACTTATGAGTATCTAAACAAAATAACCGGAGAACTAGTACAAGGCATTTTAGAGGCGGGCAAGAAGACGGGCCATGAAATTTGTGGGGGCCACATTAACGGGATGTTTGGGTTTTTCTTCACCGAAGGCCCTGTTTATAACTTTGATGATGCCAAAAAGAGCGATACGACCAAATTTGCGAAGTTTTATCAGGGAATGTTGAGGGAAGGAGTGTATCTTGCTCCCTCACAGTTTGAAGCCGGCTTTACGAGCTTGGCGCATTCTTCCCTCGATATCCAACAAACTGTAGCCGCAGCCGAGAAGGTTTTAAAGATGTTGTAG 1419 47.5 MAACISGSVGVCLPCALKLSARPTSRSSAVCSVKMAVSLDEKKKNFTLKKSEEAFNAAKELMPGGVNSPVRAFKSVGGQPIVIDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDEILAALAETMKKGTSFGAPCLLENVLAEMVISAVPSMEMVRFVNSGTEACMGVLRLARAFTGKQKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATSETLTAPYNDFSAVEDLFKTHKGEIATIILEPVVGNSGFIPPSPDFLNAIRKITKENDALLIFDEVMTGFRISYGGAQEYFKITPDLTTLGKIIGGGLPVGAYGGRKEIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEAGTYEYLNKITGELVQGILEAGKKTGHEICGGHINGMFGFFFTEGPVYNFDDAKKSDTTKFAKFYQGMLREGVYLAPSQFEAGFTSLAHSSLDIQQTVAAAEKVLKML 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49179701 49182415 - Bda008459.1 Bda11g01586 16694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01586 472 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 281 317 IPR005814 GO:0008483|GO:0030170
Bda11g01586 472 Pfam Aminotransferase class-III 80 393 IPR005814 GO:0008483|GO:0030170
Bda11g01586 472 TIGRFAM hemL: glutamate-1-semialdehyde-2,1-aminomutase 50 470 IPR004639 GO:0033014|GO:0042286
Bda11g01586 472 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 50 472 IPR004639 GO:0033014|GO:0042286
Bda11g01586 472 CDD OAT_like 55 469 IPR005814 GO:0008483|GO:0030170
Bda11g01586 472 Gene3D Aspartate Aminotransferase, domain 1 53 465 IPR015422 GO:0003824
Bda11g01586 472 SUPERFAMILY PLP-dependent transferases 48 470 IPR015424 -
Bda11g01586 472 Gene3D - 116 364 IPR015421 GO:0003824
Bda11g01586 472 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 15 470 - -
Bda11g01586 472 PANTHER BNAA09G06670D PROTEIN 15 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01586 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] - csv:101207399 818.535
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g01586 Bda14g01345 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01586 Bda-Chr11:49179701 Bda04g01060 Bda-Chr4:61607166 3.46E-29 dispersed
Bda01g00138 Bda-Chr1:21145448 Bda11g01586 Bda-Chr11:49179701 2.35E-21 transposed
Bda04g01144 Bda-Chr4:62253669 Bda11g01586 Bda-Chr11:49179701 5.26E-144 transposed
Bda07g00210 Bda-Chr7:2469267 Bda11g01586 Bda-Chr11:49179701 2.38E-21 transposed
Bda14g01021 Bda-Chr14:8613647 Bda11g01586 Bda-Chr11:49179701 1.36E-20 transposed
Bda14g01123 Bda-Chr14:10202013 Bda11g01586 Bda-Chr11:49179701 1.21E-14 transposed
Bda01g00777 Bda-Chr1:36170998 Bda11g01586 Bda-Chr11:49179701 2.65E-15 transposed
Bda11g01586 Bda-Chr11:49179701 Bda14g01345 Bda-Chr14:15519266 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g68 . Blo16g00282 . . . Bpe13g00193 Bma06g00273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01586 Bda14g01345 . Bpe15g00234 Bma03g01235 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006338 3 1 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01586 Bda_Chr11 FPKM 25.018545 30.467091 22.614347 22.855761 14.224893 14.912439 13.475003 37.747131 40.590034