Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01597 CCCCCGTCTCCAATGGCGGCCGCTACTCCTGCCTCTTCTTTCTCCAAGATTTCTCCTTTCCCTATCTCTTCCAAATCTTCGAAACTCCCTTCCAACCCCTTTGTCCCCCTTTCCTCTTTCCATTATAGATTCGCCCTCCGCCGAGGCCTCCATTTATCCAATTCTCTCTCTATCCCCAATCCCAAATCGTCTACTTCTGCCGCCGCTGCTGCCACTGCAACTTCCTCCAGCATCGCTCCGGTTATATTGTCGAACCCGGAAGCCTTTACTTCCCGATTTTCCCCCGACGAGCCCAGAAAAGGCGCCGATGTCCTCGTGGAAGCGCTCGAACGACAAGGGGTCACTGATGTGTTTGCTTACCCTGGTGGAGCTTCGATGGAGATCCACCAAGCCCTCACTCGCTCTTCTATTATTCGCAACGTCCTCCCTCGCCACGAGCAAGGCGGCATCTTTGCTGCCGAGGGGTATGCACGCTCATCCGGCCTTCCAGGTGTTTGCATTGCCACTTCGGGCCCCGGAGCCACCAATTTGGTCAGTGGGCTCGCTGATGCTTTGCTTGATAGCGTCCCGATCGTCGCCATTACGGGTCAAGTCCCACGTCGAATGATTGGTACTGATGCGTTTCAGGAAACTCCGATTGTTGAGGTAACCCGGTCAATCACAAAGCATAATTACCTTGTTCTAGATGTAGAAGATATTCCTAGGGTAGTGAATGAGGCGTTCTTCTTAGCTACTTCCGGACGGCCTGGTCCTGTTCTCATTGATATACCGAAAGATATACAACAACAGCTAGTGGTTCCTAATTGGAATCAATCTATGAAATTGCCCGGGTATATTTCTAGGCTGCCTAAGCCACCCAGTGAGAGCCATATGGAACAGATTGTGAGACTTATTTCAGAATCGAAGAAGCCCGTTTTATATGTGGGTGGTGGGTGTTTGAATTCAAGTGAGGAATTGAGACAGTTCGTCGATTTCACAGGAATTCCAGTTGCTAGTACTCTAATGGGTCTTGGAGCTTTTCCTTGTCAGGATGACTTATCTCTCCAAATGCTGGGTATGCATGGAACTGTTTATGCAAACTATGCCGTGGATAAAGCTGATTTGTTACTTGCATTTGGCGTAAGGTTTGATGATCGAGTGACGGGAAAGCTGGAGGCTTTTGCTAGCCGTGCCAAAATAGTCCATATTGATATTGATTCAGCTGAGATTGGGAAGAACAAGCAGCCACACGTGTCTGTTTGTGCAGATGTGAAAGTGGCTTTGAGAGGAATGAACCAGATTCTGGAGGGAAAAAGATCCAAGCTTAACCTCGACTTTTCAGCTTGGAGGGAGGAGCTAAATGAGCAGAAAACAACATATCCATTAAGCTTTAAAACATTTGGAGAAGCCATTCCTCCTCAATATGCAATTCAAGTTCTAGACGAATTGACCAATGGCAATGCCATCATAAGTACCGGTGTGGGGCAGCATCAGATGTGGGCTGCTCAATTTTACAAGTATAGGAAGCCTCGTCGATGGTTAACATCAGGGGGTTTGGGAGCCATGGGCTTTGGATTGCCTGCTGCCATTGGAGCTGCTGTTGCCAATCCTGATGACATTGTTGTTGACATTGATGGTGATGGAAGTTTTATTATGAATGTCCAAGAGTTAGCCACCATCAAAGTAGAGAAGCTTCCCATCAAGATAATGCTTCTGAACAATCAACACTTGGGTATGGTGGTGCAGTGGGAGGATCGCTTCTACAAGGCTAATAGAGCTCACACCTACCTAGGAAACCCAGAAAAAGAGTCAGAAATATTTCCTAATATGTTGAAATTCGCTGAGGCTTGTGAAATACCTGCTGCTCGTGTGATGAGGAAGGAAGATCTTAGAGAAGCTATCCAGAAAATGTTAGACACTCCTGGGCCTTATTTATTGGATGTAATTGTACCTCATCAAGAGCATGTCCTGCCTATGATACCGAGCGGTGGAGCTTTCAAGGATGTGATCACAGAGGGTGATGGAAGAGTATCTTATTAG 2019 47.3 PPSPMAAATPASSFSKISPFPISSKSSKLPSNPFVPLSSFHYRFALRRGLHLSNSLSIPNPKSSTSAAAAATATSSSIAPVILSNPEAFTSRFSPDEPRKGADVLVEALERQGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVVNEAFFLATSGRPGPVLIDIPKDIQQQLVVPNWNQSMKLPGYISRLPKPPSESHMEQIVRLISESKKPVLYVGGGCLNSSEELRQFVDFTGIPVASTLMGLGAFPCQDDLSLQMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADVKVALRGMNQILEGKRSKLNLDFSAWREELNEQKTTYPLSFKTFGEAIPPQYAIQVLDELTNGNAIISTGVGQHQMWAAQFYKYRKPRRWLTSGGLGAMGFGLPAAIGAAVANPDDIVVDIDGDGSFIMNVQELATIKVEKLPIKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPEKESEIFPNMLKFAEACEIPAARVMRKEDLREAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRVSY 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49581262 49583280 + Bda008478.1 Bda11g01597 16705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01597 672 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 464 665 IPR029061 -
Bda11g01597 672 CDD TPP_AHAS 464 656 IPR039368 GO:0030976
Bda11g01597 672 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 71 671 IPR045229 -
Bda11g01597 672 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 100 664 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Bda11g01597 672 Pfam Thiamine pyrophosphate enzyme, central domain 292 422 IPR012000 GO:0000287|GO:0030976
Bda11g01597 672 Gene3D - 456 642 - -
Bda11g01597 672 PANTHER ACETOLACTATE SYNTHASE 71 671 - -
Bda11g01597 672 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 95 274 IPR029061 -
Bda11g01597 672 Gene3D - 88 282 - -
Bda11g01597 672 ProSitePatterns Thiamine pyrophosphate enzymes signature. 523 542 IPR000399 GO:0000287|GO:0030976
Bda11g01597 672 CDD TPP_PYR_POX_like 103 258 - -
Bda11g01597 672 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 486 641 IPR011766 GO:0003824|GO:0030976
Bda11g01597 672 SUPERFAMILY DHS-like NAD/FAD-binding domain 287 454 IPR029035 -
Bda11g01597 672 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 100 264 IPR012001 GO:0030976
Bda11g01597 672 Gene3D - 292 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01597 K01652 E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] - zju:107418034 1090.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01265 Bda-Chr4:63182519 Bda11g01597 Bda-Chr11:49581262 3.41E-147 dispersed
Bda11g01597 Bda-Chr11:49581262 Bda13g01009 Bda-Chr13:11818105 1.07E-141 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g102 . Blo16g00269 . . . Bpe13g00201 Bma06g00260 . . . Cma10g00060 Cma11g00031 . . . . Cpe04g01617 Bhi02g00519 . . . Hepe09g0046 . . Cla06g01743 Cam06g1933 Cec06g1983 Cco06g1988 Clacu06g1889 Cmu06g1831 Cre06g2646 . . Cone13ag0223 . . . . . . . Bda11g01597 . . . . . . Cmo10g00054 Cmo11g00033 . . . . . Cpe18g00907 . . . . . . . . . . . . . . Lsi06g01643 . Chy02g02664 Cme02g02067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007549 1 1 1 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01597 Bda_Chr11 FPKM 8.736753 10.099313 16.766815 16.712425 66.938843 69.007896 66.951584 19.386576 19.517773