Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01602 ATGGCTACCCCGACTACCAGTATTGGCGGCGGCGATGAGGATAGGGTTATGGCCGCTGCGCAGCAGATCTTGAAGAGTCTCAATGCTCCGAAGGAGGTTCGTGAAGACATGCTTTTGATCTTCTCGAATTTCGATAACCGTCTGTCGAATATTACTCAGTTGATTAATAGCGAGGATTTGAAGAACGAGGGCCGCTGTGAGGCTGCCGAAAAGGTCATCCTTAGCTGGGAAGGGAGTTCTGATGCTTCTAGGAATTCTCTTCCTTGGGAGGATTCGCCGGATGAGACGGCATTTTATTTATCGGCTGTTGATGAAGTCCTTCAGTTGATTGTGGATCTTTCGCATCGGTCTGATTCGTCCGAGATTGTAGACCGGGCGTCAAATACAATCCAGGTTGCCATGACAAGGCTTGAGGAAGAGTTTCGCCATATCTTGATCAGAAGCACAGTACCCCTAGATGCCGAGCACCTCTATGGCTCAATCCGCAGGGTCTCTCTGTCTTTTGCATCCAACTATGGAGAAATTGACGAAGAGTTTGAGAGCTTTGGGGAGGTTGATCGTGATTCTGGACGGTTTCACGAAAGAGGTGCAAGTTTGGGGGATGACACATGGGTCGATTTGATACATCCCCATGCGGTAGTGGAGCTGAAAGAGATTGCAGACAGGATGGTTCGCTCTGGTTATGAAAGAGAGTGTGTTCAGGTATATAGTACTGTCCGCCGGGAAGCTTTGGATGAATGTCTGATGATTCTTGGAATTGAGAAGCTGAGCATTGAAGAGATCCAGAAAATGAAATGGAAAACCTTGGACGAGAAGATGAAGAAATGGGGTCAGGCTATCAAAATTGTTGCTCGAGTGCTTTTCACGGGTGAAAAGAGACTTTGTGATCATATATTTGACGCATCTGAAGAGTCTAAGGATATTTGCTTCAATGAGATTGCAAAAGGGTGTGTGATGCAGTTGTTAAATTTTGGGGAGGCAGTGGCTATTGGGGAAAGGTCCCCAGAGAAGTTATTTCAAATTTTGAGTATGTATGATGCTTTGGCCAATGCTTTACCGGATTTGCAAGCGATGATTACTGATGAGTTTGTCCTGGGTGAGGCACGCCAAGTGCTATCTGGCTTGGCAGAGGCATCCACGGGGACATTTGCAGTGTTCGAGAATGCTGTTCAGAATGAGACATCAAAGAAGCCCATGCTAAATGCTGAGATTCACCCTATAACGCGCTATGTAATGAATTATGTTAAATTGCTTGTGGATTACAGGGATACTATGGACTCACTTTTGCAAAGTGGGGAAGAGGAATTGAATCGCTTAAAGAACGAGATTGGCGATGATTTTGAGTTAGAATGTACATCACCTTTAGCTCATCGTTTGTTTTTGTTGATCTCGTGTCTGGAGGCCAATCTTGAAGAGAAATCAAAATTATATGGAGATGGAGCAATACAATATGTCTTTCTTATGAACAATATTTTGTACATTGTTCAGAAAGTGAAAGATTCTGAACTTAGAAAGCTATTGGGTGATGACTGGGTTCGCAAACGGCGTGGGAAGGTCCGCCAGCTTGCAACCAGTTACCTTCGTTCTTCTTGGATCAAGGTATTGTCTTATTTGAAAGATGGAGTTGGTGGGAGTTCGAGTAATGCCTTGAAGGGTGTTTTGAAAGAAAGATTTAAGAATTTTAATACGGGATTTGAGGAAATCTATAGAATTCAGACTGGTTGGAAAGTACCTGATCCTCAACTTCGCGAAGAGCTACGACTTTCTGTGTCCGAGAAAGTGATTCCAGCATACCGCTCCTTCATTGGCAGGTTTGCGAATCCCCGAGAGAGTGGAAGACATACTGAGAAATATGTCAAATATACAGAAGAAGATATAGCAAACTATCTATTGGACTTGTTTGAAGGATCACCCAGTATTCTACACCACCTGCGAAAAAAAATTACATAG 1950 43.95 MATPTTSIGGGDEDRVMAAAQQILKSLNAPKEVREDMLLIFSNFDNRLSNITQLINSEDLKNEGRCEAAEKVILSWEGSSDASRNSLPWEDSPDETAFYLSAVDEVLQLIVDLSHRSDSSEIVDRASNTIQVAMTRLEEEFRHILIRSTVPLDAEHLYGSIRRVSLSFASNYGEIDEEFESFGEVDRDSGRFHERGASLGDDTWVDLIHPHAVVELKEIADRMVRSGYERECVQVYSTVRREALDECLMILGIEKLSIEEIQKMKWKTLDEKMKKWGQAIKIVARVLFTGEKRLCDHIFDASEESKDICFNEIAKGCVMQLLNFGEAVAIGERSPEKLFQILSMYDALANALPDLQAMITDEFVLGEARQVLSGLAEASTGTFAVFENAVQNETSKKPMLNAEIHPITRYVMNYVKLLVDYRDTMDSLLQSGEEELNRLKNEIGDDFELECTSPLAHRLFLLISCLEANLEEKSKLYGDGAIQYVFLMNNILYIVQKVKDSELRKLLGDDWVRKRRGKVRQLATSYLRSSWIKVLSYLKDGVGGSSSNALKGVLKERFKNFNTGFEEIYRIQTGWKVPDPQLREELRLSVSEKVIPAYRSFIGRFANPRESGRHTEKYVKYTEEDIANYLLDLFEGSPSILHHLRKKIT 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49652969 49654918 + Bda008483.1 Bda11g01602 16710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01602 649 Coils Coil 422 442 - -
Bda11g01602 649 Pfam Exo70 exocyst complex subunit 274 631 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bda11g01602 649 SUPERFAMILY Cullin repeat-like 77 635 IPR016159 -
Bda11g01602 649 Gene3D Exocyst complex component Exo70 79 641 - -
Bda11g01602 649 PANTHER EXOCYST COMPLEX PROTEIN EXO70 54 647 IPR004140 GO:0000145|GO:0006887
Bda11g01602 649 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 54 647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01602 K07195 EXOC7, EXO70; exocyst complex component 7 - mnt:21411514 935.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g01602 Bda14g01366 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01602 Bda-Chr11:49652969 Bda15g00670 Bda-Chr15:10171818 0 dispersed
Bda14g00880 Bda-Chr14:6809627 Bda11g01602 Bda-Chr11:49652969 8.78E-57 dispersed
Bda02g00882 Bda-Chr2:49186342 Bda11g01602 Bda-Chr11:49652969 1.33E-127 transposed
Bda11g01602 Bda-Chr11:49652969 Bda14g01366 Bda-Chr14:16027255 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00126 . 10 648 EXO70 exocyst subunit family AT5G03540 76.1 2.1e-278 954.9
Bda01g00434 . 1 640 EXO70 exocyst subunit family AT5G03540 71.4 2.9e-264 907.9
Bda01g00338 . 1 666 EXO70 exocyst subunit family AT5G03540 69.0 1.5e-260 895.6
Bda01g00434 . 1 640 EXO70 exocyst subunit family AT5G52340 78.4 4.5e-291 996.9
Bda01g00338 . 1 666 EXO70 exocyst subunit family AT5G52340 75.4 5.1e-287 983.4
Bda15g00126 . 12 648 EXO70 exocyst subunit family AT5G52340 73.3 6.3e-269 923.3
Bda01g00434 . 145 633 EXO70 exocyst subunit family AT5G52350 62.0 3.1e-169 592.0
Bda01g00338 . 145 659 EXO70 exocyst subunit family AT5G52350 59.3 2.7e-165 578.9
Bda15g00126 . 147 650 EXO70 exocyst subunit family AT5G52350 58.9 1.4e-161 566.6
Bda02g00882 . 8 637 EXO70 exocyst subunit family AT5G58430 65.6 8.8e-247 849.7
Bda02g00882 . 8 636 EXO70 exocyst subunit family AT1G07000 50.7 9.5e-174 607.1
Bda04g00941 BCT 8 607 EXO70 exocyst subunit family AT1G72470 62.7 3.9e-210 728.0
Bda10g00882 BCT 1 581 EXO70 exocyst subunit family AT1G72470 63.4 4.9e-205 711.1
Bda10g00882 BCT 1 579 EXO70 exocyst subunit family AT1G54090 62.4 9.8e-206 713.4
Bda04g00941 BCT 9 605 EXO70 exocyst subunit family AT1G54090 60.2 9.8e-206 713.4
Bda10g00882 BCT 1 580 EXO70 exocyst subunit family AT3G14090 63.7 1.3e-213 739.6
Bda04g00941 BCT 2 606 EXO70 exocyst subunit family AT3G14090 61.7 3.1e-212 734.9
Bda11g01602 BCT 13 647 EXO70 exocyst subunit family AT5G50380 60.5 2.8e-222 768.5
Bda14g01366 BCT 13 650 EXO70 exocyst subunit family AT5G50380 61.2 8.2e-222 766.9
Bda15g00670 CCT,ECH 13 649 EXO70 exocyst subunit family AT5G50380 57.3 1.2e-201 699.9
Bda06g00731 . 13 639 EXO70 exocyst subunit family AT5G50380 56.2 6.1e-201 697.6
Bda03g00036 BCT 15 683 EXO70 exocyst subunit family AT4G31540 70.6 2.4e-282 968.0
Bda01g00674 BCT 6 674 EXO70 exocyst subunit family AT4G31540 69.0 1.4e-277 952.2
Bda15g00194 . 40 632 EXO70 exocyst subunit family AT3G55150 51.2 3.6e-163 572.0
Bda14g00320 . 42 630 EXO70 exocyst subunit family AT3G55150 50.6 7.0e-159 557.8
Bda07g00609 CCT 35 594 EXO70 exocyst subunit family AT3G55150 50.5 1.5e-156 550.1
Bda02g00802 BCT,CCT 1 538 EXO70 exocyst subunit family AT3G55150 51.2 1.2e-145 513.8
Bda09g01492 BCT,CCT 1 514 EXO70 exocyst subunit family AT3G55150 50.9 2.9e-136 482.6
Bda14g00320 . 42 630 EXO70 exocyst subunit family AT2G39380 52.0 1.1e-164 577.0
Bda15g00194 . 33 632 EXO70 exocyst subunit family AT2G39380 52.0 1.6e-163 573.2
Bda05g00983 . 37 604 EXO70 exocyst subunit family AT3G09530 50.5 4.4e-145 511.9
Bda05g00983 . 1 597 EXO70 exocyst subunit family AT3G09520 55.2 1.6e-176 616.3
Bda02g00802 BCT,CCT 1 548 EXO70 exocyst subunit family AT3G09520 52.2 1.1e-153 540.4
Bda09g01492 BCT,CCT 1 523 EXO70 exocyst subunit family AT3G09520 50.1 1.0e-138 490.7
Bda02g00802 BCT,CCT 6 544 EXO70 exocyst subunit family AT5G59730 56.5 1.2e-166 583.6
Bda07g00609 CCT 26 602 EXO70 exocyst subunit family AT5G59730 50.7 9.7e-161 563.9
Bda09g01492 BCT,CCT 1 521 EXO70 exocyst subunit family AT5G59730 53.2 5.2e-146 515.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01602 Bda_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0