Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01604 ATGAAGGCACTTATTCTGGTTGGAGGATTTGGGACGCGGTTGAGGCCGCTGACTCTCAGTTTCCCCAAACCACTCGTTGATTTTGCCAATAAGCCCATGATTCTGCATCAGATAGAGGCTCTCAAAGCTGTTGGAGTGACAGAAGTGGTTTTGGCCATCAACTATCAACCCGAGGTAGAGAATTTGGCCATTTTATCGACAAAATTTGCCTGGATTTTGAAGAGATTAATAAAAAGTTATCTATTTCTGCAGGTGATGTTGAATTTTTTGAAGGATTTTGAAGCAAAGCTTGGGATCAAGATCACATGTTCTCAGGAAACAGAGCCGCTCGGTACTGCTGGTCCTTTGGCTCTTGCGAGAGACAAGCTTATCGATGATTCTGGCGAACCATTTTTTGCTCTAAACAGTGATGTTATCAGTGAGTACCCCCTCAAAGAAATGATCGAGTTCCATAAATCCCACGGAGGTGAAGCTTCAATCATGGTTACCAAGGTGGATGAGCCATCAAAATATGGGGTGGTTGTAATGGAAGAATCATCTGGAAAGGTGGAAAGATTTGTAGAGAAACCAAAACTATTTGTGGGTAATAAGATCAACGCCGGAATTTATCTATTGAACCCGTCTGTTCTTGATCGAATCCAGCTACGGCCGACTTCGATCGAGAAAGAAGTCTTCCCAAAAATTGCAGCAGAGGAGAAGCTATTTGCAATGGTTTTACCTGGATTCTGGATGGACATCGGACAGCCAAGAGACTACATTTCAGGCCTCAGACTCTACTTAGACTCCTTAAAGAAGAAATCTTCACCAAAACTGGCATCAGGGCCGCATATCGTGGGCAACGTAATCGTCGATGCAACTGCGAAAATCGGCGAGGGGTGTCTGATTGGTCCCGACGTGGCAGTGGGTCCAGGCTGTGTCATCGAGTCAGGAGTCAGGCTCTCTCGCTGCACAATCATGCGGGGAGTTCGAGTGAAGAACCATGCTTGCATTTCGAGCAGCATAATCGGGTGGCACTCGACCGTCGGACAGTGGGCGAGGGTCGAAAACATGACCATTCTGGGGGAAGATGTTCATGTGGGTGATGAAGTTTACAGCAATGGAGGGGTTGTGTTGCCTCACAAAGAAATCAAATCAAGCATTTTGAAGCCAGAAATAGTTATGTGA 1164 45.88 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVENLAILSTKFAWILKRLIKSYLFLQVMLNFLKDFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFALNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESSGKVERFVEKPKLFVGNKINAGIYLLNPSVLDRIQLRPTSIEKEVFPKIAAEEKLFAMVLPGFWMDIGQPRDYISGLRLYLDSLKKKSSPKLASGPHIVGNVIVDATAKIGEGCLIGPDVAVGPGCVIESGVRLSRCTIMRGVRVKNHACISSSIIGWHSTVGQWARVENMTILGEDVHVGDEVYSNGGVVLPHKEIKSSILKPEIVM 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49660916 49662840 - Bda008485.1 Bda11g01604 16712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01604 387 Pfam Nucleotidyl transferase 2 255 IPR005835 GO:0009058|GO:0016779
Bda11g01604 387 Pfam Bacterial transferase hexapeptide (six repeats) 287 319 IPR001451 -
Bda11g01604 387 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 59 - -
Bda11g01604 387 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 84 387 - -
Bda11g01604 387 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 338 IPR029044 -
Bda11g01604 387 Gene3D Hexapeptide repeat proteins 262 382 - -
Bda11g01604 387 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 259 IPR029044 -
Bda11g01604 387 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 59 - -
Bda11g01604 387 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 84 387 - -
Bda11g01604 387 CDD M1P_guanylylT_B_like_N 1 260 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01604 K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] - egt:105977628 654.055
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00574 Bda11g01604 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01604 Bda-Chr11:49660916 Bda14g01372 Bda-Chr14:16121556 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g682 . . Bda06g00574 . Bpe12g00576 Bpe13g00205 Bma06g00254 . . . . . . . Sed08g0170 . Cpe04g01534 Bhi02g00389 Tan09g2197 Cmetu05g0932 . Hepe09g0166 . . Cla06g01633 Cam06g1816 Cec06g1866 . Clacu06g1774 Cmu06g1716 Cre06g2536 . . Cone13ag0117 Cone19ag0119 . . . . Blo13g00041 . Bda11g01604 . Bpe07g00816 . . Bma08g00186 . Cmo10g00163 . . . . . . . . . . . . . . . . . . . . . Lsi06g01515 Csa01g00184 Chy02g02549 Cme02g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004936 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01604 Bda_Chr11 FPKM 2.887957 2.285064 0.0 0.0 0.0 0.0 0.0 0.0 0.0