Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01611 ATGGCTAATGCTTTCAGCTTCTTCCTCAAAGATCAAGCAGTTGATCTTGATCCTGAACTTGGGTTCTCCAGTCTAGCCTGTTTTTCGAGCTCTTATCCTCCATTAGTGGAGGACAGTGGTCCTAACTGCTTCAAAATCAGGTCTCTTGAACAACCATATTGGGAAGAAAATAGGGAGACGAAGAGATTGAAACGAACGATGAGCGTTGCGGAATCATCGAGCTTCGTGAATGAAGGAACGATTCTCAGTCGGAGTAGCAGTACCAGTAGCTTGAACAGCTTGGCCAGGCGGCAGATTGAAGATCGTTTGCGGAGTTTTAATCAGGGGGTTGAGGTTGTCGACGGTGTAAGTTTCAAATCTGAAGACGGCGGAGGTTCGTCGGTGGAAGACGATTGCGGCGAGGAGATGAGGCTCTTTCATCTCCTCGTCGCCTGCGCCGAAGCTGTAGCCTGTAGAGACAAGTCGTACGCCTCGATGCTTTTGTCCGATCGTAGAGGCAAAGCTTTGGTGTTCGGGTCTTCGTTTCAGCGGGTTGCTTCCTGTTTCGTCCAAGGCCTAGCAGATCGACTAGCGCATATCGAACCACTCGGGTCAATCGGGCGATTTTCACCGACCATGGACTTTGTATCAGAAAGCAAGGAGGAAGCTCTGCGTTTGGTGTATGAGATTTGCCCGCAAATTAAGTTTGGTCATTTTGTGGCCAATTCTGCAATATTGGAAGCCATTGAGGGAGAGAATTATATCCACATTGTGGACTTGGGAATGACCCTTGGTTTAGGACTGGGCCAGCAATGGCTCAGCCTCTTCGACAGCCTCGCTATGCGCTCTGGCCAGCTGCCTTGCCGGGTCCGAATCACTGGCATTGGCCTCGACATCGAAAGATTCCAAATAATTGGCCAGAATATCGAAGCTCACGCCGAAAAGTTTGGAATCGATCTGGAATTCTCGGCGGTGGAAAGTTCATTGGAAAACCTGCGGATCGAAGACATAAAACTCGTGGAAAATGAAGTTTTAATCGTCAATAGCATTCTTCAACTGCATTGTGTAGTGAAAGAGAGCAGAGGGGCTTTAAATTCAGTCCTCAAAATGATCCATAAGCTTTCACCAAAGATCTTAACTTTGGTGGAGCAAGATTCCAATCATAACGGGCCATTTTTTCTTGGGAGATTCATGGAAGCTCTCCATTACTACTCTGCAATATTCGACTCGCTCGACGCAATGCTGCCGAAATACGACACTCGGAGGGCGAAAATAGAGCATTTTTACTTTGCGGAGGAGATAAGAAACATAGTGAGCTGCGAGGGGCCGGGGAGGGTCGAAAGGCACGAGAAGGTGGAGCAATGGCGGAGGAGGATGAGCAGGGCCGGGTTTCAGGCTGCGCCCATGAAGATGGCTGGTGAGGCCAAGAAATGGCTTGGGAACAATAAGGATTTTGAAGGCCACACCATTGTTGACGAGAAGGGGTGTTTGGTTCTTGGGTGGAAATCAAAGCCCATTGTTGCAGCTTCTTGCTGGAAATGCTAG 1524 48.75 MANAFSFFLKDQAVDLDPELGFSSLACFSSSYPPLVEDSGPNCFKIRSLEQPYWEENRETKRLKRTMSVAESSSFVNEGTILSRSSSTSSLNSLARRQIEDRLRSFNQGVEVVDGVSFKSEDGGGSSVEDDCGEEMRLFHLLVACAEAVACRDKSYASMLLSDRRGKALVFGSSFQRVASCFVQGLADRLAHIEPLGSIGRFSPTMDFVSESKEEALRLVYEICPQIKFGHFVANSAILEAIEGENYIHIVDLGMTLGLGLGQQWLSLFDSLAMRSGQLPCRVRITGIGLDIERFQIIGQNIEAHAEKFGIDLEFSAVESSLENLRIEDIKLVENEVLIVNSILQLHCVVKESRGALNSVLKMIHKLSPKILTLVEQDSNHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEHFYFAEEIRNIVSCEGPGRVERHEKVEQWRRRMSRAGFQAAPMKMAGEAKKWLGNNKDFEGHTIVDEKGCLVLGWKSKPIVAASCWKC 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49792414 49794141 + Bda008493.1 Bda11g01611 16719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01611 507 Pfam GRAS domain family 139 506 IPR005202 -
Bda11g01611 507 ProSiteProfiles GRAS family profile. 129 506 IPR005202 -
Bda11g01611 507 PANTHER DELLA PROTEIN RGL1-LIKE 79 506 - -
Bda11g01611 507 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 79 506 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01611 - - - tcc:18605049 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01611 Bda-Chr11:49792414 Bda14g01380 Bda-Chr14:16405423 0 dispersed
Bda11g01611 Bda-Chr11:49792414 Bda11g01619 Bda-Chr11:49915521 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g917 . Blo16g00254 . . . Bpe13g00212 Bma06g00247 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0038 . . . . . . . . Bda11g01611 . . Bpe15g00201 Bma03g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006339 3 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16711 PF03514 GRAS 1.20E-107 CL0063 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01611 Bda_Chr11 FPKM 17.620283 20.717976 22.226048 21.193272 25.441774 26.603918 24.920547 18.360435 18.977615