Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01622 ATGGCGACTGCGATGGCGGTTGAGCCGGCGGGAAAGCTACCGCGACCGGGTCGCGGGGGCTTCCAAGCGCATGGGCTATCCGAAGAAGAAGCTAGGGTTCGAGCGATCGCAGAGATCGTTAACTCCATGGTTGACCTCTCACGTAAAGGCCAAAACGTCGATCTGAATGCTCTCAAATCCTCCGCTTGCCGGAAATACGGCCTTTCCCGAGCTCCAAAACTGGTGGAAATGATAGCTGCTCTGCCTGAGTCGGATCGTGAGTCACTGCTACCTAAACTCCGTGCGAAGCCCGTTCGAACGGCCTCAGGCATTGCTGTGGTGGCTGTGATGTCGAAACCTCATCGGTGTCCTCACATAGCGACGACTGGGAATATTTGTGTGTATTGCCCCGGAGGACCTGACTCGGACTTTGAGTACAGCACTCAATCTTACACTGGCTACGAGCCCACTAGTATGAGGGCAATTCGCGCTAGGTATAACCCATACGTCCAGGCTAGAAGCAGGATAGATCAATTGAAACGTTTGGGTCACAGTGTTGATAAGGTTGAGTTCATCCTGATGGGTGGTACTTTCATGTCACTACCAGCAGATTACCGCGATTACTTTATAAGAAATCTTCACGACTCTCTGTCTGGACACACTTCCGCCAATGTTGAGGAAGCAGTTTCCTACTCAGAGCATAGTGCTACTAAATGTATTGGAATGACAATTGAGACGAGACCTGATTATTGCCTCGGGCCTCACTTGCGGCAGATGCTATCTTATGGTTGCACTCGACTAGAGATTGGAGTTCAAAGCACATATGAGGACGTGGCACGGGACACTAATAGAGGCCATACAGTAGCTGCTGTAGCTGATTGCTTTTGCTTGGCGAAGGATGCTGGTTTCAAGGTTGTGGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGAGATATGGAAAGTTTTAAGGAGTTCTTTGAGAGCCCTTTATTCAGAGCTGATGGGCTTAAGATTTATCCTACACTTGTAATCCGTGGAACTGGGCTTTACGAACTTTGGAAAACTGGAAGGCATGATGTTACTTTTCTTTGTATGTTTAATTTGTTTGTATCTTATTGTTTGTTTAGCAGGTATAGAAATTACCCCCCAGAACAACTTGTTGACATTATAGCAAGAATTCTAGCTTTGGTTCCTCCTTGGACCCGAGTTTATAGAGTTCAGCGCGATATTCCTATGCCTCTAGTTACATCCGGGGTTGATAAAGGAAACCTTCGAGAGTTGGCTCTTGCTCGAATGGAAGATTTGGGATTGAAATGTCGTGATGTTAGAACACGAGAAGCTGGAATCCAGGACATTCACCACAACATTAAGCCAGAAGAAGTGGAGCTTGTCCGACGTGATTACACAGCAAATGAAGGGTGGGAAACTTTTCTGTCTTATGAAGATACACGCCAGGACATTCTTGTTGGGTTATTGCGACTACGAAAATGTGGTCGAAATACTACATGTCCTGAACTAATGGGGAAGTGTTCTATTGTTCGTGAGCTTCATGTTTATGGAACTGCTGTTCCTGTTCATGGCCGAGATGCTGACAAACTGCAACACCAGGGTTATGGTACACTTCTAATGGAGGAAGCTGAGCACATCGCTCGAAGGGAGCACAGATCGACAAAGATAGCAGTTATCTCAGGTGTTGGGACTCGCCATTACTATCGGAAATTGGGGTATGAACTTGAAGGTCCTTACATGGTGAAAAAACTAGTTTGA 1755 46.78 MATAMAVEPAGKLPRPGRGGFQAHGLSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSSACRKYGLSRAPKLVEMIAALPESDRESLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDSLSGHTSANVEEAVSYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFKEFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRHDVTFLCMFNLFVSYCLFSRYRNYPPEQLVDIIARILALVPPWTRVYRVQRDIPMPLVTSGVDKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHNIKPEEVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAEHIARREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKKLV 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49964881 49969301 + Bda008511.1 Bda11g01622 16730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01622 584 MobiDBLite consensus disorder prediction 1 25 - -
Bda11g01622 584 SUPERFAMILY Radical SAM enzymes 136 352 - -
Bda11g01622 584 Gene3D - 435 583 - -
Bda11g01622 584 CDD Radical_SAM 113 355 - -
Bda11g01622 584 PIRSF HAT_Elp3 21 358 IPR034687 -
Bda11g01622 584 PIRSF HAT_Elp3 363 584 IPR034687 -
Bda11g01622 584 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 433 584 IPR000182 GO:0016407
Bda11g01622 584 PANTHER ELONGATOR COMPLEX PROTEIN 3 2 583 IPR034687 -
Bda11g01622 584 SMART MiaB 106 362 IPR006638 GO:0003824|GO:0051536
Bda11g01622 584 SFLD Radical SAM 54 583 IPR007197 GO:0003824|GO:0051536
Bda11g01622 584 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 51 354 IPR034687 -
Bda11g01622 584 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 2 583 IPR039661 -
Bda11g01622 584 ProSiteProfiles Radical SAM core domain profile. 99 375 IPR007197 GO:0003824|GO:0051536
Bda11g01622 584 Pfam Radical_SAM C-terminal domain 330 429 IPR032432 -
Bda11g01622 584 Pfam Acetyltransferase (GNAT) family 436 572 IPR000182 GO:0016407
Bda11g01622 584 SFLD ELP3-like 54 583 IPR034687 -
Bda11g01622 584 Pfam Radical SAM superfamily 124 312 IPR007197 GO:0003824|GO:0051536
Bda11g01622 584 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 390 579 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01622 K07739 ELP3, KAT9; elongator complex protein 3 (tRNA uridine(34) acetyltransferase) [EC:2.3.1.-] - zju:107418157 1077.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0203 Cone19ag0191 . . . . . . Bda11g01622 . . Bpe15g00195 Bma03g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012251 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 0 0 1 1 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16713 PF04055 Radical_SAM 3.30E-17 CL0036 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01622 Bda_Chr11 FPKM 99.041733 110.866348 59.976322 59.58913 14.998587 16.700418 14.756545 48.334465 50.356152