Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01623 ATGCTGGAATACTATAAGCAGCTTGCTTCTAGGCCATCTACCCAAGATTCTCTCAAGCTTCTCGAGGCTGATATTCACCATGCCAATTTTTTGGCGGCTTCGATTCCGAGAAGTAAATGCGGTGTCTATTTTCAAATGAAGTTGGTTTATGACCGATTAGCTCCAATTCTTATATTGTTATTTCAATGGATGGATTGCTCTTGTTCCTGCTTATTTTCAACTTATTTCGAACTCGTCCACCTAGTTTTGTACAAGGTTGGTTCCTCTTTCCATGGTTTTACTTTGTTTATTTACTGTGTTAAGGTAGACTCAGATGGGAAGCTGAATATCTCGTGCGGAAGAAAAGCGACAATTGGTGATTTCTACTCTGTCATACTACCATCACTACAGAGACTCCACAGTGATTTTTCAGATTCGGGTAGTATTCTCGACGATCATTCAAGCTCAGAGCTAATGAGCTGGAACAGATTCGAGGTGAAAAGGAAACTTACAGAGTTGGACATAGAGAGAGAAGATGAATGTGGAATTTGCTTAGAGCTTTGTACCAAAATGGTCTTGCCGAATTGTTGTCATGCTATGTGCCTCAGCTGCTACCGCGACTGGAGCACAAGGTCGGAATCTTGCCCCTTTTGTCGGGGAAGTTTGAAGAGAACGAAATCCGGGGACCTCTGGGTTTTGACGAGCAAAAATGACGTAATAGACACTCGAACGGTTCTCGAGGAAGATATCATACGCTTTCATCTCTTCATCAACAACCTTCCTATATACACACCTGATTCTTTATTTTTCATGTGTTATGAGTACTTAATCTAA 813 41.33 MLEYYKQLASRPSTQDSLKLLEADIHHANFLAASIPRSKCGVYFQMKLVYDRLAPILILLFQWMDCSCSCLFSTYFELVHLVLYKVGSSFHGFTLFIYCVKVDSDGKLNISCGRKATIGDFYSVILPSLQRLHSDFSDSGSILDDHSSSELMSWNRFEVKRKLTELDIEREDECGICLELCTKMVLPNCCHAMCLSCYRDWSTRSESCPFCRGSLKRTKSGDLWVLTSKNDVIDTRTVLEEDIIRFHLFINNLPIYTPDSLFFMCYEYLI 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49978317 49980353 + Bda008512.1 Bda11g01623 16731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01623 270 Pfam Zinc finger, C3HC4 type (RING finger) 171 216 - -
Bda11g01623 270 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
Bda11g01623 270 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Bda11g01623 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 222 IPR013083 -
Bda11g01623 270 SUPERFAMILY RING/U-box 161 217 - -
Bda11g01623 270 SMART ring_2 174 211 IPR001841 -
Bda11g01623 270 PANTHER RING FINGER PROTEIN 41, 151 9 270 - -
Bda11g01623 270 PANTHER OS01G0905700 PROTEIN 9 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01623 - - - jre:109018365 347.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01698 Bda-Chr7:31426469 Bda11g01623 Bda-Chr11:49978317 4.53E-95 dispersed
Bda11g01623 Bda-Chr11:49978317 Bda10g00955 Bda-Chr10:43871886 1.68E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g900 . . . . . Bpe13g00215 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0047 . . Lsi02g00469 Csa01g00926 Chy12g01201 . . . Bda11g01623 . . . . . . . . . . . . . . . . . . . . . Cla03g00325 Cam03g0342 Cec03g0334 Cco03g0347 Clacu03g0344 Cmu03g0949 Cre03g0642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001225 3 4 0 0 3 1 3 3 3 3 1 2 2 2 3 2 1 2 4 2 3 3 3 3 3 2 3 4 6 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01623 Bda_Chr11 FPKM 10.964126 10.699648 14.648295 14.290605 15.526165 15.724188 16.306808 20.565205 20.517687