Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01624 ATGGCATATTCGGAACCTGGCAATACTGAAAGGGAGATATTGCCATTGGTAGTACCTAGGAAGCCCCGGATTTTACTTGCAGCCAGCGGAAGTGTAGCAGCAATAAAATTTGGGAATTTATGTCGTTCTTTTGCTGAATGGGCCGATGTAAGAGCCGTCATTACAAAGGCTTCTTTACATTTCATTGACCGTGCATCCCTACCAAGGGATATTGTTCTTTACACGGATGATGATGAATGGAACAGTTGGCAAAAAATTGGCGATCCTGTTCTCCACATTGAGCTTCGCAAATGGGCTGATATTATGGTTATTGCTCCACTTTCAGCAAATACACTGGGCAAGATTGCTGGGGGATTGTGCGACAATTTATTAACATGTATTGTGCGAGCATGGGATTATGACAAGCCAATCTTTGTTGCGCCAGCAATGAATACGTTCATGTGGAAGAACCCATTCACTGAACGACATCTTGTATTAATTGATGAGCTTGGAATTACCCTCATTCCACCAGAAACTAAAAGATTGGCTTGCGGGGATTATGGAAATGGTGCAATGGCTGAACCTTCTTTAATCTTCTCAACTGTGAGACTCTTCTTCGAGTCACGAGTCAGGCAAAATGCCATTAATATCCAGTAA 636 42.61 MAYSEPGNTEREILPLVVPRKPRILLAASGSVAAIKFGNLCRSFAEWADVRAVITKASLHFIDRASLPRDIVLYTDDDEWNSWQKIGDPVLHIELRKWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYDKPIFVAPAMNTFMWKNPFTERHLVLIDELGITLIPPETKRLACGDYGNGAMAEPSLIFSTVRLFFESRVRQNAINIQ 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49981866 49984961 - Bda008513.1 Bda11g01624 16732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01624 211 Pfam Flavoprotein 23 196 IPR003382 GO:0003824
Bda11g01624 211 Gene3D - 21 210 IPR036551 GO:0003824
Bda11g01624 211 PANTHER HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY 18 202 - -
Bda11g01624 211 SUPERFAMILY Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 21 199 IPR036551 GO:0003824
Bda11g01624 211 PANTHER BNAA01G27100D PROTEIN 18 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01624 K01598 PPCDC, coaC; phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36] - csin:114319828 359.762
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g898 . Blo16g00249 . . . Bpe13g00216 Bma06g00244 . Cmo13g00809 Cmo18g00187 Cma10g00076 . . . . . . . . . . . . . . . . . . . . Cone2ag0951 Cone16ag0049 . . Lsi02g00468 Csa01g00924 Chy12g01202 . . . Bda11g01624 . . Bpe15g00667 . . Sed01g1585 . . . Cma18g00210 Car13g00626 . . Cpe18g00886 Bhi08g01698 Tan05g2901 Cmetu12g1074 Lac10g0539 . . . Cla03g00324 Cam03g0341 Cec03g0333 Cco03g0346 Clacu03g0343 Cmu03g0948 Cre03g0641 . Csa01g00077 . Cme02g02055
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002582 1 3 1 1 2 2 2 1 2 1 1 2 3 1 2 4 2 2 2 2 2 2 2 2 2 1 2 4 3 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01624 Bda_Chr11 FPKM 25.476391 26.989403 21.161629 19.969444 15.549107 16.003325 14.649996 15.947196 15.250994