Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01628 ATGGCTCTCTTGCCCCAAAACTTCCCCTTTCCATCGCCCATTTCTCGCCATCGGTGTCCGAACCGCTACGCTTCCAAAGCTAGTCTTTTTCTTTACTCTAGTTCCTCTTTTCGTCTCTCTTTCTCTCCAACTTCGCCTTTATCTGCTACTCCAATTTTCCTTCCTTTTCTCGAAGAAGCAGAGGAGGAGGAAGAAGATGCAGCGGGTGGAAGTGACGAGGAAGAACTTTCGAATGACCCTCTTATCAGATTTTTCAAGTCTCGTTCTCCAATTCAAGACCCACAACGCGAAGGAAAACCATCGTTGCAGAAGAATCGCCGCTCCTCCTGGCATCTCTGTGAGAGCGCCGAATTCCACGATCAAACCGAAAGCGGCCCCAATGAGGAACTGGCAATTGAAGAAAAAACAAGAACAATTGGGGTTGAGAGTTCGGAGTCAGTTTCCTCAGCAGAAGGCATTGTCGGAGATATTGTGCAGATTGCTAGAAACCTACCGGAGAATACGACGTTGGGGGAGGTTTTGGGAGACTACGAAGGAAGAATCAGCGAGAAAGACTGCGAGGAGGTGTTGAGTTTGTTAGGCGAGGCAGGTGTTTTGGTATGTTGTCTATATTTCTTCGAATGGATGAGGAATCAGGAACCCTCTCTCGTTTCCCCTCGAGCGTGTTCAATTTTGTTTCCATTGCTTGGAAGAGCTGGAATGGGCGATGTTTTGATGGTCTTGTTCAGGAATTTACCGGTAAAAGAAGAACTAATGGATGTTCATGTCTATAATGCTGCAATATCTGGGCTTATGAGCGGTAAGAGGTTTGAGGATGCTTACGAGGTCTATGAAATAATGGAAACGAACAATATTCGTCCAGATCACGTGACATGTTCGATAATGATTACGATGATGAGGAAAACCGGCCGAAGTGCAAAAGAAGCATGGGACTACTTTCAGAAAATGAACAAGAAAGGAGTGAAATGGAGTCCGGAAGTTTTCGGTGCGATAATAAAGTCGTTTTGCGAGGAGGGTCTGAAGAGCCAAGCTCTTATCATTCAGTTGGAGATGAACAAGAAAGGGATTCCTTCAAATGCAATAGTTTACAACACTCTAATGGACGCTTTCAATAAATCTAACCAAATAGAAGAAGTTGAAGGTCTTTTTGCTGAAATGAAAGACAAAGGGATTAAGCCTACGACTGCAACTTTTAACATCTTGATGTCTGCATATAGTATGAGAATGCAACCCGAAATCGTCGAGAGGCTGCTCTTTGAAATGGAAGAAATGGGCTTGGAGCCAAATGTGAAGTCGTATACTTGCCTGATTAGTGCATACGGAAGGTTGAAGAAGACGAGTGACTTGGCTGCAAACGCATTTCTGAGGATGAAAAAACGGGGGATAAAACCGACTTCTCACTCCTACACGGCACTTGTTCATGCTTATTCTCTTGGTGGGTGGCATGAGAAAGCCCTGATTGCATTCGAAAACATGAAGACTGAAAGGCTAAAACCATCAATGGAAACCTACACGGCCCTGCTGGACGCGTTCAGGCGAGCTGGAGATGCCGAAACTTTGATGAAAATTTGGAAAATGATGATCGAAGAGAAAATCAAAGGGTCGAGAGTTACTTTCAACATACTTGTCGACGGGTTTGCAAAACAAGGCCTCTACGCTGAAGCCAGAGACGTAATTCACGAATTCGGTAAGATCGGGGAAATACCGACCGTGATGACATATAATATGCTTATAAACGCATATGCTCGAGGAGGGCAACACTCAAAGATGCCTCAGCTGTTGAAAGAGATGGAAAATCTGAACTTGAAACCTGATTCGGTAACATATTCGACGATGATTTATGCGTATATTCGAGTTCGGGATTTCAAGAGGGCGTTTTTTTATCACAAGAGTATGGTTAAGAGTGGGCAAGTGCCAGATGCAGGCTCTTACAGGAAGTTGAGGGAAATTTTGGATGTGAAAGCTGCAAAGAAGAACAAGAAGGACAAGAGTGCTATACTTGGAATCATCAATAGCAAAATGGGTTTGGTGAAAGCTAAGAAGGGTAAGAAAGATGAGTTCTGGAAGAACAAGAAAAAACATTTTAGTGCTGATAGAATTGCTCCACGTCGATAA 2115 43.88 MALLPQNFPFPSPISRHRCPNRYASKASLFLYSSSSFRLSFSPTSPLSATPIFLPFLEEAEEEEEDAAGGSDEEELSNDPLIRFFKSRSPIQDPQREGKPSLQKNRRSSWHLCESAEFHDQTESGPNEELAIEEKTRTIGVESSESVSSAEGIVGDIVQIARNLPENTTLGEVLGDYEGRISEKDCEEVLSLLGEAGVLVCCLYFFEWMRNQEPSLVSPRACSILFPLLGRAGMGDVLMVLFRNLPVKEELMDVHVYNAAISGLMSGKRFEDAYEVYEIMETNNIRPDHVTCSIMITMMRKTGRSAKEAWDYFQKMNKKGVKWSPEVFGAIIKSFCEEGLKSQALIIQLEMNKKGIPSNAIVYNTLMDAFNKSNQIEEVEGLFAEMKDKGIKPTTATFNILMSAYSMRMQPEIVERLLFEMEEMGLEPNVKSYTCLISAYGRLKKTSDLAANAFLRMKKRGIKPTSHSYTALVHAYSLGGWHEKALIAFENMKTERLKPSMETYTALLDAFRRAGDAETLMKIWKMMIEEKIKGSRVTFNILVDGFAKQGLYAEARDVIHEFGKIGEIPTVMTYNMLINAYARGGQHSKMPQLLKEMENLNLKPDSVTYSTMIYAYIRVRDFKRAFFYHKSMVKSGQVPDAGSYRKLREILDVKAAKKNKKDKSAILGIINSKMGLVKAKKGKKDEFWKNKKKHFSADRIAPRR 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49999049 50001738 - Bda008517.1 Bda11g01628 16736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01628 704 PANTHER - 16 696 - -
Bda11g01628 704 Pfam Pentatricopeptide repeat domain 489 544 IPR002885 -
Bda11g01628 704 Pfam Pentatricopeptide repeat domain 416 476 IPR002885 -
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Bda11g01628 704 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Bda11g01628 704 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Bda11g01628 704 TIGRFAM PPR: pentatricopeptide repeat domain 290 324 IPR002885 -
Bda11g01628 704 TIGRFAM PPR: pentatricopeptide repeat domain 503 533 IPR002885 -
Bda11g01628 704 TIGRFAM PPR: pentatricopeptide repeat domain 432 465 IPR002885 -
Bda11g01628 704 TIGRFAM PPR: pentatricopeptide repeat domain 607 641 IPR002885 -
Bda11g01628 704 TIGRFAM PPR: pentatricopeptide repeat domain 573 606 IPR002885 -
Bda11g01628 704 TIGRFAM PPR: pentatricopeptide repeat domain 537 561 IPR002885 -
Bda11g01628 704 TIGRFAM PPR: pentatricopeptide repeat domain 256 288 IPR002885 -
Bda11g01628 704 MobiDBLite consensus disorder prediction 87 107 - -
Bda11g01628 704 Pfam PPR repeat family 359 405 IPR002885 -
Bda11g01628 704 Pfam PPR repeat family 569 616 IPR002885 -
Bda11g01628 704 Pfam PPR repeat family 253 298 IPR002885 -
Bda11g01628 704 PANTHER OS03G0856100 PROTEIN 16 696 - -
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 605 639 IPR002885 -
Bda11g01628 704 Gene3D Tetratricopeptide repeat domain 156 306 IPR011990 GO:0005515
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 464 IPR002885 -
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 323 IPR002885 -
Bda11g01628 704 Gene3D Tetratricopeptide repeat domain 569 662 IPR011990 GO:0005515
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Bda11g01628 704 Gene3D Tetratricopeptide repeat domain 450 567 IPR011990 GO:0005515
Bda11g01628 704 Gene3D Tetratricopeptide repeat domain 307 449 IPR011990 GO:0005515
Bda11g01628 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01628 - - - pmum:103337985 910.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01628 Bda-Chr11:49999049 Bda11g01679 Bda-Chr11:50925475 7.47E-16 dispersed
Bda11g01628 Bda-Chr11:49999049 Bda10g00525 Bda-Chr10:38896193 1.98E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48