Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01647 ATGCAAGACCATAACGGAATTCTGACTTGCTTTTCTTCCGGCGACGGACAATCCGACGACCTACCTGTCGTGACGAGGTTGGGTCATCGAGTTCTGTCGTCGGTGTACCGGACTAAGGTCGCTGATCAATGCCGATTGATCACCATTACATGGAGCAAGAATACGTTCCTCAATGGACTATCTGTTTCAGTTGATGGTCCAGAAGGAGAAAGCCAGTTCACCTGCAGAATTGAGCTGAAGCCATGGCAGTTCTCGAGAAGGCAAGGTTCAAAGCGGTTATTTGTTGATTGTTACGCCGTCGATGTGTTTTGGGACCTCCGAACTGCGAAATTCGACCGCCAAGTAGAACCCATTTCGGAGTTTTACGTCGCTGTTGTTTCTGATGACGAAGTCGTACTTCTTCTCGGCGATCGGAAAAAGGACGCCTATCGGAAAACAGGTTGCAGGCCTGCTCTCATTGATCCGACTTTGATTTCGAAGAAGGAACATCTATTTGGGAAGAAGAAGTTCAGTACAAGCTCTAAATTTGACGAAAAGGGCGCAAGGCATGCAATCTCTGTGATTACTAAAAAATCTCCAAACAGAGGTAAACCAGAAATGGAGATTAGAATCGACGGCCATTTGGTGATTCACGTCAAGCATCTCCAATGGAAGTTCAGAGGCAACGAGATTGTTAACTTCGAAAAATTAAGATTAGAGGTTTATTGGGACGTTCATGATTGGCTATTCTCCCCTGGTTTAAGGCCTGCATTGTTCATTTTCAAACCGAATCCTCATCCGCCACAATCGCCGTCCGTCCGAATAGAGAGTTCTGGAAGTGGGGAGGGGTGTAGTGGCTGCGGGTCATCGGAATTTCGGTTGCTTTTCTATGCTTGGAAGGATGAAAGAAAGGAATATATTAGCCATGAGAGAGCGAGAGAGAGAGAGAGAGAGGATCCTAGAAATGTGTGGAAGATGAGCACAACTGGGTTTGTGGGATGTGGGGAGAAATGGACGAGACAATAA 1005 46.47 MQDHNGILTCFSSGDGQSDDLPVVTRLGHRVLSSVYRTKVADQCRLITITWSKNTFLNGLSVSVDGPEGESQFTCRIELKPWQFSRRQGSKRLFVDCYAVDVFWDLRTAKFDRQVEPISEFYVAVVSDDEVVLLLGDRKKDAYRKTGCRPALIDPTLISKKEHLFGKKKFSTSSKFDEKGARHAISVITKKSPNRGKPEMEIRIDGHLVIHVKHLQWKFRGNEIVNFEKLRLEVYWDVHDWLFSPGLRPALFIFKPNPHPPQSPSVRIESSGSGEGCSGCGSSEFRLLFYAWKDERKEYISHERAREREREDPRNVWKMSTTGFVGCGEKWTRQ 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 50510345 50511349 - Bda008538.1 Bda11g01647 16755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01647 334 PANTHER OS01G0909400 PROTEIN 2 293 - -
Bda11g01647 334 Pfam Plant protein of unknown function (DUF868) 30 293 IPR008586 -
Bda11g01647 334 PANTHER EXPRESSED PROTEIN 2 293 IPR008586 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01647 - - - pop:7457778 381.333
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g01647 Bda14g00793 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01647 Bda-Chr11:50510345 Bda14g00793 Bda-Chr14:6135401 1.13E-168 dispersed
Bda11g01647 Bda-Chr11:50510345 Bda14g00789 Bda-Chr14:6089000 8.77E-171 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g837 Blo04g00715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0934 Cone16ag0069 . . . . . . . . Bda11g01647 Bda14g00793 . Bpe15g00656 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001841 6 1 3 2 4 2 2 2 2 2 1 2 2 1 2 3 2 5 2 2 2 2 2 2 1 2 1 2 3 3 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01647 Bda_Chr11 FPKM 2.013709 1.7425 0.06652 0.0 0.261873 0.163242 0.349921 0.0 0.0