Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01653 ATGGATAACCCCGAAACTTCACAAACTGTAGACGTTGAAAATGCAGGAGAAAAAAACCTAGAATCATGCGGGTTTTCTGAGGTGTGTTTTATTGAGTTAGCTGGGACTGCTGAAAATGGAAAAATGGTCAATGTTTGTAATAAGGAGGAGAGTGGGAATGTAGACGAAGAAGAAATCAAATTTGTGAAAGAAATAGATAGTACTACAAGTAGATGTTTTACTGCGTGCATGGATGGAGTGGTGGATGAGCTGAAGTGTGTGAAACATAATGAGTTGGAGAAGGGCTGTCTGAGTGATGGTGGTGACGTTGATTGCAAAGACGAGTCTGAAATTGGAACCGAGAAGATTGTGGAGATAAAACATGATGAAGTTGATCTCGAAGCAGATGATTCTGCTATGAAGATTGAAGTTTCTGGAGATGGTTTATCACTATTTGTTGATTTTTCCAATGTTAACGATGATGTGTTAGATTCTGAGAAGATATCAAGTGAAAATATATCAAAAGAAGATATGGAGAAAATGAAGGTTGTCGACGATGGAGATCGTAATTATGATTTTTCTGAGGGTGATATAGTGTGGGTAAAGACCAAAAACCAGAAATGGTGGCCTGGAAAGGTAACTGATCGTTTGGCTGTGGATATTTCTGCTGCTGCTGCTGCTGACCAAAGTGGCTCTTTACTCGTCGAGTATTTTGGAAGCAGCAATGTTACAAAGTGCTTGTCTTCTCAATTAAAGCCTTTACAGGAAGATTTTAAGTTCTTATCAGAGAATAACAAGTCGAGGCGTTTCATTGGAGCCTTAGAAAAAGCCACGAATGAGTTTGGAAGGCATATAAGATTGGAGATGATTTGTTCTTGCGTCGAGGATGGTATTCAGAAGGAAATAGGTTCATTGCCTTCACACAAATCTAGTGTACTTGGTAAATTCTCAGTCAGTCATTTTGAACCAGCCTTATTTTTAGCACATCTTAGGAGCATTGCACAGGGTGGATCTGTATCTGAAGATCTTGAGTTAATCATCATGCAGCATCGTTTGTCAGCCATTTACTGTTCAATGGGATATCTCCAATTACCTTTGCATCAACTCTATGACACAAGTGATGAAGGAGACAGTTCACTTGAAACTTCTTCAATCAGTGCAGAAGAAAAAGAGGAAATCATATCGAAATCTAGAAAGAGAAAGAGAATCAATGACATTGAAGAACTTGAGTTGAGTGAATTGGATTCTACTTGTAGGGAGCTGGATGATGGGTGCTCTAAGAAAAAAGAGCATGTCTCCGAGCCAAGAGAGCGGAAGAGGAGCAAATATTTGTCATATCCATACATAAACTGGGGCCAGATCAGCATGCCAGCTGAAACCGAAGACTGTAGTGCCCGGAAAGTTCCCCATGGAAGTGTGCAAGAGACAATAGATGATAACTCCATTCCTGGGTCCGATTTTGTTACAAATAGAAGTGGCAATAAGTTCTGGAGCAAGTGGTATAAAAAATTCTCAACTGGGAGTGATGTTTTTGGTAATTCTGAATCAATTAACATGTCGTCTGCTGACTTTTTATCTGAGCTTCGATTTATAGCTTTAAATTGTCTGTATCCAAGTAAAAACCAAAATTTTGTTTCAGTTGGATGGTTCTTTTCCAGATTTAGAATCTCAGAATTTCATGATGAGTCGACCTACAGTGGCGAGAATGTAGATATTGCTGCTGAATCATGTCCAAGGAAAACGCTGGTCGACATCAAACTTTCTTCTGCGAGTAAATCTGAAGATAAGAAAAGAAAGAGACAAGCAAGTTTAAAAAATGAAGCAGGATGCAATCCTATTTCTGACAAGGAAGAATTCAAATCTAAAGATGAGGGAAGCATTATGTCCCTTTCTGGCTTATCAGAAGTCAACATTAATATTGCTCCCAGTAGTTCACTGATAAAAGATTCTTTGGAGATTGGTCCTCACAATGCAAATGGTAAGCCGAAGTGGAAGAAGAGGAAGGGGGAAGCATCTTCGGTTAATGAACTGTCTAAACAGAGAACTTCCATACCCGATTTAAATGGAGGTCATGGAAAACCTGAGAGGAAGAAAAGACAGAAGATGGGTGTTACTTCAGAGCATTCAATCGTTACTTCTGAGTTGTTAAATGTGAATCAAAGGAGCAATGAAGGATCATTTGTCATAGATTTACAGGGTACTCCTGCATATTTTTCAAGAAAACACGAAGATCAATTGACCATGTCTGCTTCTGGAGTTCCAGATTTAAATGGAACTGACGTTGAATGTAGCTTGCAGGGAAAGGATATTGAAGATGGTAATGCCAGTCAATCACTTAGTAAGAAGGAAAAGAGAGAATGCGAAGCTTTTTCAGGAGATCAGAAAATTGATTCAGCTCAAAAAAGACCAGATATGAAAACAGATTCTGATACAGTTGGGCGTAATGGAGGTACCATTCTGTTAACGTTCTCCCCAGAAGCTTCCACTCCTTCGAAGGAAGAGCTAATAACTACATTCGGTAAATTTGGCCCATTGCGAGAATCAGAGATTAAGTTTATGGATTCTTCAAATGCTCTAGTTGTATTCACGAAAGATGGTGATGCCGTTGAAGCTCTTAGGAGTTTAGAAATGAACAAACCTTTCGGAGCTGCCATTGTCAAATCCCAGCTCTGTAATCATTCTGCTGCATCTGGGTTTTCTGATAGCTGTTCATCTTAA 2697 39.27 MDNPETSQTVDVENAGEKNLESCGFSEVCFIELAGTAENGKMVNVCNKEESGNVDEEEIKFVKEIDSTTSRCFTACMDGVVDELKCVKHNELEKGCLSDGGDVDCKDESEIGTEKIVEIKHDEVDLEADDSAMKIEVSGDGLSLFVDFSNVNDDVLDSEKISSENISKEDMEKMKVVDDGDRNYDFSEGDIVWVKTKNQKWWPGKVTDRLAVDISAAAAADQSGSLLVEYFGSSNVTKCLSSQLKPLQEDFKFLSENNKSRRFIGALEKATNEFGRHIRLEMICSCVEDGIQKEIGSLPSHKSSVLGKFSVSHFEPALFLAHLRSIAQGGSVSEDLELIIMQHRLSAIYCSMGYLQLPLHQLYDTSDEGDSSLETSSISAEEKEEIISKSRKRKRINDIEELELSELDSTCRELDDGCSKKKEHVSEPRERKRSKYLSYPYINWGQISMPAETEDCSARKVPHGSVQETIDDNSIPGSDFVTNRSGNKFWSKWYKKFSTGSDVFGNSESINMSSADFLSELRFIALNCLYPSKNQNFVSVGWFFSRFRISEFHDESTYSGENVDIAAESCPRKTLVDIKLSSASKSEDKKRKRQASLKNEAGCNPISDKEEFKSKDEGSIMSLSGLSEVNINIAPSSSLIKDSLEIGPHNANGKPKWKKRKGEASSVNELSKQRTSIPDLNGGHGKPERKKRQKMGVTSEHSIVTSELLNVNQRSNEGSFVIDLQGTPAYFSRKHEDQLTMSASGVPDLNGTDVECSLQGKDIEDGNASQSLSKKEKRECEAFSGDQKIDSAQKRPDMKTDSDTVGRNGGTILLTFSPEASTPSKEELITTFGKFGPLRESEIKFMDSSNALVVFTKDGDAVEALRSLEMNKPFGAAIVKSQLCNHSAASGFSDSCSS 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 50564361 50567057 - Bda008545.1 Bda11g01653 16761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01653 898 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 739 886 - -
Bda11g01653 898 Gene3D - 178 281 - -
Bda11g01653 898 Pfam PWWP domain 189 273 IPR000313 -
Bda11g01653 898 MobiDBLite consensus disorder prediction 768 785 - -
Bda11g01653 898 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 383 633 - -
Bda11g01653 898 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1 374 - -
Bda11g01653 898 MobiDBLite consensus disorder prediction 762 785 - -
Bda11g01653 898 PANTHER ALDOLASE-RELATED 739 886 - -
Bda11g01653 898 SUPERFAMILY Tudor/PWWP/MBT 182 289 - -
Bda11g01653 898 MobiDBLite consensus disorder prediction 643 700 - -
Bda11g01653 898 ProSiteProfiles PWWP domain profile. 188 250 IPR000313 -
Bda11g01653 898 MobiDBLite consensus disorder prediction 586 614 - -
Bda11g01653 898 PANTHER ALDOLASE-RELATED 383 633 - -
Bda11g01653 898 PANTHER ALDOLASE-RELATED 1 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01653 - - - jre:108982558 451.055
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00598 Bda11g01653 CCT
Bda06g00598 Bda11g01653 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01280 Bda-Chr1:48201577 Bda11g01653 Bda-Chr11:50564361 4.23E-07 dispersed
Bda06g00598 Bda-Chr6:8203902 Bda11g01653 Bda-Chr11:50564361 2.82E-95 dispersed
Bda08g01072 Bda-Chr8:23361714 Bda11g01653 Bda-Chr11:50564361 2.53E-11 dispersed
Bda11g01653 Bda-Chr11:50564361 Bda13g01620 Bda-Chr13:39688146 1.63E-06 dispersed
Bda11g01653 Bda-Chr11:50564361 Bda14g00812 Bda-Chr14:6260683 2.34E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01653 Bda_Chr11 FPKM 8.326192 9.037432 22.439453 21.088362 6.96575 5.868976 6.745473 2.8502 3.527153