Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01656 ATGCAGAGCACGGCCTTGACGATTTCTCCTTCACTGCCTCTTCTCAAGTCTCGAAGGCAATATAATCCTGCTTTCAGCCATGGATTCAATCCCATGCGTCTTTCTTGCTCTTCTTCCAATCAGAACAGCCTCAAAAACTCCGTCAATGAGTCTCGGTCTTCGTCTTTGCCTGCCCGATCGTGGTCATTGTCGTCATTGTCTTTTCCGTCGTCCAAGGTAAGTCCGTGGACCGGTGCGCCGCTGCTCGCTTCTGATTATGGAAAGAGTGCGTTCGAGGTACGAGCTACTTCGGTGCCGGAGAGTGCAGGGGAGGATGCCAGTGCTGGGGGCTTGAAGAAAACGCTTGAGCTGGGAATGTTGATGGGTCTCTGGTACCTTTTCAACATATATTTCAATATCTACAACAAGCAGGTTCTTAAGGTCTATCCATTCCCTGTAACGGTCACTACAGTTCAATTTGCTGTTGGCACTCTGCTTGTTCTTTTTATGTGGGGTTTTAATCTCTATAAAAAGCCAAAGATCAGTGGTGTACAGCTTGCCGCTATTCTTCCATTGGCAGCTGTTCATACGCTGGGAAACCTTTTTACAAACATGAGTCTTGGGAAAGTTGCTGTATCATTCACGCACACAATCAAAGCTATGGAGCCTCTATTTTCCGTTGTCCTATCTGCCATGTTTCTAGGAGAGACACCTACTCCGTGGGTAGTTATTTCTCTTCTACCAATTATTGGCGGAGTGGCATTAGCATCAGCAACTGAGGCCTCATTTAATTGGTCCGGATTTTCGAGTGCAATGGCTTCCAATTTGACTAATCAATCACGAAATGTCCTCAGCAAAAAGCTCATGATTAAAAAAGAGGAGTCATTGGACAACATCACTCTCTTCTCAATAATTACCATTATGTCTTTTTTCTTGTTAGCACCAGTGGCTTTGTTCATGGAAGGTGTCAAGTTTACCCCTGCATATCTGCAATATGCAGGATTGAATGTCAAACAAGTGTTCATTAGATCTCTTCTTGCTGCTCTCTGTTTTCATGCTTATCAACAGGTTTCTTACATGATATTACAGAGGGTATCGCCAGTTACCCACTCAGTTGGCAACTGTGTGAAGCGTGTGGTGGTCATTGTGAGCTCTGTTATCTTCTTCCAAACACCCGTTTCTCCTATCAATAGTTTTGGCACCGCTGTGGCACTTGCCGGAGTTTTCTTGTATTCAAGGGTCAAGCGTATAAAGCCAAAGGCCAAAACAGTTTGA 1254 44.82 MQSTALTISPSLPLLKSRRQYNPAFSHGFNPMRLSCSSSNQNSLKNSVNESRSSSLPARSWSLSSLSFPSSKVSPWTGAPLLASDYGKSAFEVRATSVPESAGEDASAGGLKKTLELGMLMGLWYLFNIYFNIYNKQVLKVYPFPVTVTTVQFAVGTLLVLFMWGFNLYKKPKISGVQLAAILPLAAVHTLGNLFTNMSLGKVAVSFTHTIKAMEPLFSVVLSAMFLGETPTPWVVISLLPIIGGVALASATEASFNWSGFSSAMASNLTNQSRNVLSKKLMIKKEESLDNITLFSIITIMSFFLLAPVALFMEGVKFTPAYLQYAGLNVKQVFIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSFGTAVALAGVFLYSRVKRIKPKAKTV 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 50639562 50642592 - Bda008550.1 Bda11g01656 16764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01656 417 PANTHER SOLUTE CARRIER FAMILY 35 49 392 - -
Bda11g01656 417 SUPERFAMILY Multidrug resistance efflux transporter EmrE 303 409 - -
Bda11g01656 417 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 115 415 IPR004696 GO:0016021|GO:0022857|GO:0055085
Bda11g01656 417 Pfam Triose-phosphate Transporter family 116 405 IPR004853 -
Bda11g01656 417 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 49 392 - -
Bda11g01656 417 SUPERFAMILY Multidrug resistance efflux transporter EmrE 160 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01656 K15283 SLC35E1; solute carrier family 35, member E1 - csv:101203848 607.831
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g01656 Bda15g00555 CCT
Bda06g00602 Bda11g01656 CCT
Bda11g01656 Bda15g00555 ECH
Bda06g00602 Bda11g01656 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00605 Bda-Chr6:8242992 Bda11g01656 Bda-Chr11:50639562 0 dispersed
Bda09g00389 Bda-Chr9:4950552 Bda11g01656 Bda-Chr11:50639562 3.30E-74 dispersed
Bda11g01656 Bda-Chr11:50639562 Bda15g00555 Bda-Chr15:8675523 0 dispersed
Bda14g01165 Bda-Chr14:10982055 Bda11g01656 Bda-Chr11:50639562 2.51E-155 transposed
Bda11g01656 Bda-Chr11:50639562 Bda06g00602 Bda-Chr6:8222811 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g761 . . Bda06g00602 Bda15g00555 . Bpe13g00243 Bma06g00217 Bma12g01040 Cmo13g00914 Cmo18g00130 . . . . . Cpe20g00246 . . . . . . . . . . . . . . . Cone2ag0910 Cone16ag0098 Cone13ag0145 Cone19ag0142 Lsi02g00376 Csa01g00856 Chy12g01264 Cme12g01691 . Blo15g00265 Bda11g01656 . Bpe07g00843 . . Bma08g00100 . . . Cma13g00885 Cma18g00172 Car13g00725 Car18g00163 Cpe09g01023 . Bhi08g01617 . . Lac10g0453 . . . Cla01g01303 Cam01g1427 Cec01g1460 Cco01g1463 Clacu01g1369 Cmu01g1275 Cre01g1262 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda09g00389 BCT 1 395 Antiporters AT5G54800 75.5 9.2e-162 566.6
Bda07g00346 BCT 1 268 Antiporters AT5G54800 69.3 8.8e-96 347.4
Bda08g00208 . 92 415 Antiporters AT5G54800 53.6 3.0e-88 322.4
Bda08g00197 . 104 415 Antiporters AT5G54800 54.6 5.2e-88 321.6
Bda14g01165 . 20 402 Antiporters AT3G01550 61.1 9.1e-122 433.7
Bda06g00602 BCT,CCT,ECH 56 421 Antiporters AT3G01550 57.6 1.9e-111 399.4
Bda06g00605 . 56 419 Antiporters AT3G01550 57.9 2.7e-110 395.6
Bda11g01656 CCT,ECH 53 413 Antiporters AT3G01550 58.1 1.5e-108 389.8
Bda15g00555 BCT,CCT,ECH 55 389 Antiporters AT3G01550 58.4 6.3e-99 357.8
Bda11g01656 CCT,ECH 1 416 Antiporters AT5G33320 67.9 1.6e-148 522.7
Bda06g00602 BCT,CCT,ECH 3 423 Antiporters AT5G33320 65.7 2.2e-142 502.3
Bda06g00605 . 1 421 Antiporters AT5G33320 65.6 1.1e-141 500.0
Bda15g00555 BCT,CCT,ECH 3 389 Antiporters AT5G33320 67.8 1.4e-136 483.0
Bda14g01165 . 75 402 Antiporters AT5G33320 62.8 2.6e-114 409.1
Bda09g00389 BCT 20 396 Antiporters AT1G61800 74.1 1.6e-156 549.3
Bda07g00346 BCT 43 268 Antiporters AT1G61800 73.9 4.8e-92 335.1
Bda08g00208 . 117 418 Antiporters AT1G61800 52.3 1.9e-85 313.2
Bda08g00197 . 117 418 Antiporters AT1G61800 52.3 2.5e-85 312.8
Bda08g00208 . 22 427 Antiporters AT5G17630 70.0 1.4e-155 546.2
Bda08g00197 . 22 427 Antiporters AT5G17630 70.0 2.4e-155 545.4
Bda09g00389 BCT 87 394 Antiporters AT5G17630 55.6 1.1e-91 334.0
Bda07g00346 BCT 70 267 Antiporters AT5G17630 50.5 7.1e-51 198.4
Bda06g00458 . 53 443 Antiporters AT3G13320 75.4 7.5e-160 560.5
Bda13g00559 . 66 448 Antiporters AT3G13320 74.4 1.2e-154 543.1
Bda04g00956 . 57 425 Antiporters AT3G13320 74.4 5.0e-148 521.2
Bda07g00432 . 3 460 Antiporters AT3G13320 64.6 2.1e-146 515.8
Bda01g00159 . 35 464 Antiporters AT2G38170 70.2 2.7e-163 572.0
Bda01g00159 . 44 432 Antiporters AT3G51860 73.8 3.6e-152 535.0
Bda01g00159 . 68 469 Antiporters AT5G01490 61.5 1.7e-135 479.6
Bda06g00458 . 68 443 Antiporters AT1G55720 74.8 1.0e-151 533.5
Bda13g00559 . 66 444 Antiporters AT1G55720 72.4 1.8e-145 512.7
Bda07g00432 . 55 460 Antiporters AT1G55720 69.0 1.0e-140 496.9
Bda04g00956 . 49 429 Antiporters AT1G55720 68.1 2.4e-137 485.7
Bda01g00159 . 99 461 Antiporters AT1G55720 50.1 3.5e-88 322.4
Bda06g00458 . 71 443 Antiporters AT1G55730 78.8 2.5e-163 572.0
Bda13g00559 . 66 444 Antiporters AT1G55730 76.0 4.6e-157 551.2
Bda07g00432 . 11 460 Antiporters AT1G55730 67.3 6.8e-153 537.3
Bda04g00956 . 57 430 Antiporters AT1G55730 72.3 6.6e-148 520.8
Bda01g00159 . 99 461 Antiporters AT1G55730 51.8 3.8e-95 345.5
Bda01g01709 . 4 527 Antiporters AT5G27150 76.3 7.6e-231 796.6
Bda08g00277 . 21 539 Antiporters AT5G27150 71.0 4.1e-208 721.1
Bda04g00588 . 15 530 Antiporters AT5G27150 64.7 7.2e-189 657.1
Bda01g01693 . 12 531 Antiporters AT5G27150 63.8 7.4e-186 647.1
Bda07g00386 . 14 550 Antiporters AT5G27150 55.3 3.4e-154 542.0
Bda08g00277 . 21 534 Antiporters AT3G06370 73.1 1.0e-206 716.5
Bda01g01709 . 5 530 Antiporters AT3G06370 70.3 2.5e-205 711.8
Bda04g00588 . 19 532 Antiporters AT3G06370 65.4 2.5e-184 642.1
Bda01g01693 . 3 530 Antiporters AT3G06370 58.2 1.1e-168 590.1
Bda07g00386 . 11 555 Antiporters AT3G06370 55.5 6.3e-148 521.2
Bda07g00386 . 9 558 Antiporters AT5G55470 66.5 7.8e-204 706.8
Bda08g00277 . 19 521 Antiporters AT5G55470 57.8 7.4e-162 567.4
Bda01g01709 . 18 511 Antiporters AT5G55470 58.2 9.6e-162 567.0
Bda01g01693 . 21 519 Antiporters AT5G55470 57.0 1.1e-157 553.5
Bda04g00588 . 1 516 Antiporters AT5G55470 54.7 7.4e-154 540.8
Bda01g01709 . 10 526 Antiporters AT3G05030 79.3 5.5e-237 817.0
Bda08g00277 . 21 539 Antiporters AT3G05030 72.5 2.5e-213 738.4
Bda04g00588 . 15 530 Antiporters AT3G05030 65.7 1.7e-193 672.5
Bda01g01693 . 12 531 Antiporters AT3G05030 62.9 1.4e-184 642.9
Bda07g00386 . 14 550 Antiporters AT3G05030 55.9 5.3e-155 544.7
Bda13g01271 . 99 645 Antiporters AT1G15460 68.1 4.9e-220 760.8
Bda14g00809 BCT 102 644 Antiporters AT1G15460 56.7 3.1e-174 608.6
Bda03g00828 . 102 650 Antiporters AT1G15460 55.5 5.4e-174 607.8
Bda03g00828 . 3 652 Antiporters AT3G06450 75.3 7.3e-293 1003.0
Bda14g00809 BCT 3 645 Antiporters AT3G06450 72.6 3.3e-277 951.0
Bda13g01271 . 4 638 Antiporters AT3G06450 56.5 3.9e-214 741.5
Bda11g01655 BCT 3 491 Antiporters AT3G06450 52.2 2.6e-165 579.3
Bda03g00828 . 1 675 Antiporters AT2G47160 75.1 2.7e-308 1054.3
Bda14g00809 BCT 1 646 Antiporters AT2G47160 75.3 3.1e-296 1014.2
Bda13g01271 . 4 638 Antiporters AT2G47160 56.3 1.5e-213 739.6
Bda11g01655 BCT 1 496 Antiporters AT2G47160 54.7 2.3e-182 636.0
Bda13g01271 . 4 645 Antiporters AT1G74810 68.9 2.9e-259 891.3
Bda14g00809 BCT 7 644 Antiporters AT1G74810 57.8 1.8e-213 739.2
Bda03g00828 . 1 647 Antiporters AT1G74810 56.1 2.9e-211 731.9
Bda03g00828 . 1 674 Antiporters AT3G62270 76.7 1.0e-307 1052.4
Bda14g00809 BCT 1 646 Antiporters AT3G62270 78.3 1.6e-297 1018.5
Bda13g01271 . 4 638 Antiporters AT3G62270 58.2 1.3e-217 753.1
Bda11g01655 BCT 1 503 Antiporters AT3G62270 55.0 4.2e-181 631.7
Bda13g01271 . 4 643 Antiporters AT4G32510 71.9 7.7e-273 936.4
Bda03g00828 . 1 632 Antiporters AT4G32510 55.8 1.9e-207 719.2
Bda14g00809 BCT 1 606 Antiporters AT4G32510 56.1 3.2e-202 701.8
Bda13g01271 . 4 644 Antiporters AT5G25430 69.4 1.5e-260 895.6
Bda03g00828 . 7 651 Antiporters AT5G25430 53.4 4.7e-198 688.0
Bda14g00809 BCT 7 644 Antiporters AT5G25430 53.6 5.8e-196 681.0
Bda07g01728 . 1 1140 Antiporters AT2G01980 63.5 0.0e+00 1352.4
Bda07g01728 . 21 737 Antiporters AT1G14660 62.5 1.9e-256 882.1
Bda13g01606 . 29 636 Antiporters AT5G11800 74.1 1.3e-231 799.3
Bda01g00616 . 49 566 Antiporters AT5G11800 72.3 8.5e-207 716.8
Bda06g00656 . 44 566 Antiporters AT5G11800 71.8 4.4e-195 677.9
Bda06g00656 . 4 560 Antiporters AT5G51710 80.8 2.2e-241 831.6
Bda13g01606 . 55 609 Antiporters AT5G51710 64.7 1.4e-179 626.3
Bda01g00616 . 51 539 Antiporters AT5G51710 62.1 7.9e-162 567.4
Bda13g01606 . 48 637 Antiporters AT2G19600 74.7 5.2e-225 777.3
Bda01g00616 . 13 567 Antiporters AT2G19600 67.6 7.6e-200 693.7
Bda06g00656 . 25 557 Antiporters AT2G19600 69.3 2.1e-189 659.1
Bda06g01050 . 147 565 Antiporters AT1G49810 72.9 1.5e-170 595.9
Bda06g01081 . 147 565 Antiporters AT1G49810 72.9 2.0e-170 595.5
Bda08g00770 . 169 585 Antiporters AT1G49810 71.0 1.0e-161 566.6
Bda08g00809 . 147 563 Antiporters AT1G49810 70.5 2.2e-161 565.5
Bda06g01081 . 1 580 Antiporters AT3G19490 74.5 3.1e-238 821.2
Bda06g01050 . 1 580 Antiporters AT3G19490 72.8 4.5e-229 790.8
Bda08g00809 . 1 579 Antiporters AT3G19490 72.8 3.5e-226 781.2
Bda08g00770 . 1 601 Antiporters AT3G19490 70.5 6.9e-222 766.9
Bda09g00322 . 1 203 Antiporters AT5G12860 94.1 5.6e-104 375.2
Bda02g00281 . 1 172 Antiporters AT5G12860 55.9 2.2e-63 240.4
Bda14g01580 . 113 583 Antiporters AT5G64280 70.1 2.2e-193 672.2
Bda14g01580 . 1 583 Antiporters AT5G64290 75.1 4.4e-221 764.2
Bda09g00322 . 2 203 Antiporters AT5G64290 51.7 4.7e-50 196.1
Bda15g00897 . 3 379 Antiporters AT4G28390 81.2 9.3e-175 609.8
Bda10g00725 . 2 390 Antiporters AT4G28390 75.3 1.5e-161 565.8
Bda05g00462 . 2 385 Antiporters AT4G28390 75.5 1.7e-160 562.4
Bda12g00155 . 3 385 Antiporters AT4G28390 74.2 4.6e-158 554.3
Bda12g00154 . 2 391 Antiporters AT4G28390 70.2 7.9e-150 526.9
Bda11g01769 . 358 657 Antiporters AT4G28390 61.5 5.4e-106 381.3
Bda11g01733 . 408 707 Antiporters AT4G28390 60.9 7.7e-105 377.5
Bda10g00725 . 1 391 Antiporters AT3G08580 79.7 4.3e-172 600.9
Bda05g00462 . 1 386 Antiporters AT3G08580 78.7 5.0e-168 587.4
Bda12g00155 . 1 386 Antiporters AT3G08580 76.3 4.8e-163 570.9
Bda12g00154 . 1 392 Antiporters AT3G08580 70.9 2.2e-152 535.4
Bda15g00897 . 1 378 Antiporters AT3G08580 69.3 5.3e-146 514.2
Bda11g01769 . 360 651 Antiporters AT3G08580 57.7 2.5e-95 345.9
Bda11g01733 . 410 701 Antiporters AT3G08580 57.3 1.2e-94 343.6
Bda10g00725 . 1 391 Antiporters AT5G13490 83.0 3.2e-183 637.9
Bda05g00462 . 1 386 Antiporters AT5G13490 81.2 4.8e-179 624.0
Bda12g00155 . 1 386 Antiporters AT5G13490 79.7 1.6e-174 609.0
Bda15g00897 . 1 378 Antiporters AT5G13490 75.6 1.6e-161 565.8
Bda12g00154 . 1 392 Antiporters AT5G13490 73.3 5.9e-161 563.9
Bda11g01769 . 361 657 Antiporters AT5G13490 62.1 3.5e-105 378.6
Bda11g01733 . 411 707 Antiporters AT5G13490 61.4 5.1e-104 374.8
Bda11g01733 . 407 703 Antiporters AT5G17400 76.1 1.2e-132 469.5
Bda11g01769 . 357 653 Antiporters AT5G17400 75.8 1.6e-132 469.2
Bda10g00725 . 87 382 Antiporters AT5G17400 63.2 3.2e-109 391.7
Bda15g00897 . 77 370 Antiporters AT5G17400 62.9 4.2e-109 391.3
Bda05g00462 . 82 372 Antiporters AT5G17400 62.5 6.0e-108 387.5
Bda12g00155 . 86 372 Antiporters AT5G17400 63.1 2.3e-107 385.6
Bda12g00154 . 82 382 Antiporters AT5G17400 57.8 1.3e-102 369.8
Bda03g01496 . 2 496 Antiporters AT5G17850 55.4 6.4e-148 521.2
Bda03g00550 . 2 431 Antiporters AT5G17860 52.6 3.0e-110 396.0
Bda12g00087 . 6 544 Antiporters AT2G47600 70.1 2.5e-213 738.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001174 5 3 4 5 4 2 2 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 3 2 2 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01656 Bda_Chr11 FPKM 8.351687 8.320606 10.469256 9.390604 9.714297 12.039792 10.697271 31.23243 31.356253