Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01663 ATGGCTTCATCAAGCTCTTACAGTTCACCATGCGCCGCCTGCAAATTCCTCAGAAGAAAATGCTTACCAGGCTGCGTATTCGCACCTTATTTTCCACCAGAAGAACCTCAAAAATTTGCAAATGTTCACAAGATTTTCGGAGCCAGCAATGTAACGAAGCTCCTCAATGAGATTCTTCCTCATCAGAGAGAAGATGCAGTTAATTCTCTTGCCTACGAAGCAGAGGCAAGAATAAGAGATCCAGTCTTTGGCTGTTCTGGAGCCATCTCATTTTTCCAACGACAAGTCCAGAGACTCCAGAAAGAGCTGGACGCTGCAAACGCCGATCTGATTCGATATTCTTGCTTTGGGATTCCACCAAATTTTCAGATACAACGAGAAGTAGCTTTTGTTCAGCAAATGTCTTCTCGCATGAAACAATTTGAGTTCAACAGATTGGCCAGCAGTGAGGAAGGAGGGATAAACGAGAACCCTAATTCTTTCCCAGTCAATTACGCACTTCCTTGGAGTGAGAATTCATCTGGCTTTATCAATGGAGGAGGAGCAGATGGCCTGAACAAAAGTCTCTGA 570 44.21 MASSSSYSSPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKIFGASNVTKLLNEILPHQREDAVNSLAYEAEARIRDPVFGCSGAISFFQRQVQRLQKELDAANADLIRYSCFGIPPNFQIQREVAFVQQMSSRMKQFEFNRLASSEEGGINENPNSFPVNYALPWSENSSGFINGGGADGLNKSL 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 50732063 50732632 - Bda008556.1 Bda11g01663 16771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01663 189 Coils Coil 89 109 - -
Bda11g01663 189 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Bda11g01663 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Bda11g01663 189 PANTHER ELONGATED PETIOLULE 1 1 184 - -
Bda11g01663 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 184 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda11g01663 Bda15g00546 CCT
Bda11g01663 Bda15g00546 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01663 Bda-Chr11:50732063 Bda15g00546 Bda-Chr15:8519291 1.42E-78 dispersed
Bda11g01663 Bda-Chr11:50732063 Bda01g01103 Bda-Chr1:45777636 4.44E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16718 PF03195 LOB 3.20E-40 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01663 - - tcc:18604002 267.314