Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01678 ATGGCGAAATCCGGCGAAGTTTGCCGGCGGAGTTTGCCGGAGGAAGGGTCCCCTCAGTGTTCGGGCCAGCTTCATGTTTTAGCTGTCGACGATAGCCATGTCGATCGGAAGGTTATCGAGAGGTTGCTTAGAATCTCTTCTTGTAAAGTGACAGCAGTAGAGAGTGGGACGAGAGCTCTTCAGTTTCTGGGGTTGGATGGAGCTAAAACATCTGGAATTGATGGTTTGAAAGTGCATCTGATAATGACAGATTACTCGATGCCTGGAATGACAGGATATGAACTGCTGAAGAAGATCAAGGAATCGTCGGATTTCAGGGAAGTTCCTGTAGTCGTGATGTCGTCTGAGAATATCTTAGCTCGTATTGATAGGTGTTTGGAGGAAGGCGCAGAAGAGTTTATCGTGAAGCCGGTGAAACTCTCCGACGTGAAGCGATTGAAAGATTTTGTGATAACGAAAGGGAAAAGCGACGAAATTAGAGGGCGGAGATCGGAAAAGAGGAAGCTACGAGACGAAGAAAATGGGTTCTCGGACAATCCCGCTAGGAATTGTGAGGTTTCCACCCAGCTACGTAAGAAGCCTAGATTGTGCAAGATGAATTGA 603 47.26 MAKSGEVCRRSLPEEGSPQCSGQLHVLAVDDSHVDRKVIERLLRISSCKVTAVESGTRALQFLGLDGAKTSGIDGLKVHLIMTDYSMPGMTGYELLKKIKESSDFREVPVVVMSSENILARIDRCLEEGAEEFIVKPVKLSDVKRLKDFVITKGKSDEIRGRRSEKRKLRDEENGFSDNPARNCEVSTQLRKKPRLCKMN 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 50923039 50924130 + Bda008574.1 Bda11g01678 16786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01678 200 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 18 185 - -
Bda11g01678 200 CDD REC_typeA_ARR 26 146 - -
Bda11g01678 200 SMART REC_2 24 147 IPR001789 GO:0000160
Bda11g01678 200 SUPERFAMILY CheY-like 23 146 IPR011006 -
Bda11g01678 200 Pfam Response regulator receiver domain 26 143 IPR001789 GO:0000160
Bda11g01678 200 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 185 IPR045279 GO:0009736
Bda11g01678 200 MobiDBLite consensus disorder prediction 161 178 - -
Bda11g01678 200 ProSiteProfiles Response regulatory domain profile. 25 151 IPR001789 GO:0000160
Bda11g01678 200 MobiDBLite consensus disorder prediction 161 182 - -
Bda11g01678 200 Gene3D - 24 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01678 K14492 ARR-A; two-component response regulator ARR-A family - zju:107419317 249.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01678 Bda-Chr11:50923039 Bda15g00091 Bda-Chr15:3136179 3.33E-49 dispersed
Bda07g01573 Bda-Chr7:29161978 Bda11g01678 Bda-Chr11:50923039 2.22E-67 transposed
Bda10g01007 Bda-Chr10:44240060 Bda11g01678 Bda-Chr11:50923039 1.50E-66 transposed
Bda11g01678 Bda-Chr11:50923039 Bda14g00828 Bda-Chr14:6372462 8.73E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda07g01573 . 1 163 Response Regulator Gene Family AT1G59940 66.5 1.3e-55 213.8
Bda10g01007 . 1 164 Response Regulator Gene Family AT1G59940 66.7 4.8e-55 211.8
Bda11g01678 . 1 150 Response Regulator Gene Family AT1G59940 67.5 3.0e-49 192.6
Bda14g00828 . 15 152 Response Regulator Gene Family AT1G59940 64.0 6.7e-41 164.9
Bda15g00091 . 8 149 Response Regulator Gene Family AT1G59940 58.5 1.4e-38 157.1
Bda07g01573 . 19 192 Response Regulator Gene Family AT1G10470 63.4 1.4e-54 209.9
Bda10g01007 . 28 190 Response Regulator Gene Family AT1G10470 67.5 4.5e-53 204.9
Bda11g01678 . 15 172 Response Regulator Gene Family AT1G10470 65.4 2.3e-49 192.6
Bda14g00828 . 15 168 Response Regulator Gene Family AT1G10470 60.6 1.8e-41 166.4
Bda15g00091 . 10 171 Response Regulator Gene Family AT1G10470 53.1 5.8e-37 151.4
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda11g01678 . 16 172 Response Regulator Gene Family AT5G62920 71.1 2.6e-53 205.3
Bda07g01573 . 30 160 Response Regulator Gene Family AT5G62920 71.8 4.3e-48 188.0
Bda10g01007 . 30 159 Response Regulator Gene Family AT5G62920 74.6 2.8e-47 185.3
Bda14g00828 . 24 174 Response Regulator Gene Family AT5G62920 65.8 2.6e-45 178.7
Bda15g00091 . 10 152 Response Regulator Gene Family AT5G62920 55.2 2.4e-38 155.6
Bda11g01678 . 5 172 Response Regulator Gene Family AT1G19050 65.3 9.2e-52 200.3
Bda10g01007 . 26 189 Response Regulator Gene Family AT1G19050 60.0 1.4e-44 176.4
Bda07g01573 . 31 205 Response Regulator Gene Family AT1G19050 56.0 2.4e-44 175.6
Bda14g00828 . 23 160 Response Regulator Gene Family AT1G19050 69.1 2.7e-43 172.2
Bda15g00091 . 8 154 Response Regulator Gene Family AT1G19050 53.7 6.4e-37 151.0
Bda15g00091 . 1 149 Response Regulator Gene Family AT2G41310 60.9 2.4e-45 179.1
Bda07g01573 . 33 166 Response Regulator Gene Family AT2G41310 58.2 2.8e-41 165.6
Bda10g01007 . 33 170 Response Regulator Gene Family AT2G41310 58.6 3.0e-40 162.2
Bda11g01678 . 19 147 Response Regulator Gene Family AT2G41310 59.4 7.5e-39 157.5
Bda15g00091 . 1 176 Response Regulator Gene Family AT3G57040 54.5 7.5e-50 194.1
Bda07g01573 . 31 167 Response Regulator Gene Family AT3G57040 58.2 1.8e-43 172.9
Bda10g01007 . 31 161 Response Regulator Gene Family AT3G57040 60.7 7.5e-42 167.5
Bda11g01678 . 23 147 Response Regulator Gene Family AT3G57040 61.0 4.1e-40 161.8
Bda14g00441 . 1 144 Response Regulator Gene Family AT3G57040 55.3 9.5e-37 150.6
Bda11g01678 . 21 172 Response Regulator Gene Family AT1G74890 67.5 4.6e-51 198.0
Bda10g01007 . 23 163 Response Regulator Gene Family AT1G74890 68.1 9.9e-46 180.3
Bda07g01573 . 25 162 Response Regulator Gene Family AT1G74890 66.7 1.3e-45 179.9
Bda14g00828 . 21 174 Response Regulator Gene Family AT1G74890 63.5 1.9e-44 176.0
Bda15g00091 . 4 154 Response Regulator Gene Family AT1G74890 53.0 3.1e-39 158.7
Bda10g01007 . 30 161 Response Regulator Gene Family AT2G40670 62.2 8.5e-40 160.2
Bda07g01573 . 30 157 Response Regulator Gene Family AT2G40670 61.1 1.1e-39 159.8
Bda11g01678 . 23 147 Response Regulator Gene Family AT2G40670 61.8 1.4e-37 152.9
Bda07g01573 . 16 157 Response Regulator Gene Family AT3G56380 57.7 5.0e-42 167.5
Bda10g01007 . 22 161 Response Regulator Gene Family AT3G56380 61.0 5.0e-42 167.5
Bda11g01678 . 16 147 Response Regulator Gene Family AT3G56380 59.0 1.1e-38 156.4
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda03g00757 . 65 297 Response Regulator Gene Family AT5G60100 58.7 6.3e-68 255.0
Bda14g00095 . 41 303 Response Regulator Gene Family AT5G60100 54.4 7.2e-64 241.5
Bda08g00081 . 24 157 Response Regulator Gene Family AT5G60100 61.9 1.1e-43 174.5
Bda14g00095 . 175 316 Response Regulator Gene Family AT5G02810 59.1 2.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012253 2 1 2 2 2 0 1 1 0 0 0 0 1 1 1 1 0 2 1 1 0 1 1 1 1 0 1 3 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16721 PF00072 Response_reg 3.40E-21 CL0304 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01678 Bda_Chr11 FPKM 5.239708 5.668991 8.093135 5.815073 9.397182 10.136486 9.71541 14.408345 13.148442