Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01684 ATGGGTGTCGATTATTACAACATACTGAAAGTGAACAGAAATGCGAGCGAGGACGATTTGAAGAAATCGTACAGGAGATTAGCCAGGATATGGCATCCTGACAAGAATCCGGTGAAAAAGCGGGAAGCCGAAGCGAAATTCAAGCAAATTTCTGAGGCTTACGACGTTCTTAGTGATCCTCAGAAGCGTCAGATCTACGATCTTTACGGTGAAGAAGCCCTAAAGTCCGGGCAATTCCCTCCGCCTTCTCAGCCGCAGCCGTCGATGTCCTCGACGCGCAGGCACCATAGCCAGAACTACCACCATCCGCCTCCGAACACGACCTCGTTTCGGTTTAATCCAAGGGATGCGGATGATATATACGCGGAATTTTTTGGGCCGGAGAGTGGCGCCGCTGGTGGTGGAGGTGGCGGTGGGGGGGCAAATAGGACTTCGAATGGGAATTTCGGGGTTGGTTCTCAAGCGAAGAAGGCTGCTGCGATTGAGAATGTTTTATCGTGTAGTTTGGAAGAGCTCTACAAAGGAGCGAAGAAGAAGATGAGGATTTCCAGGAATGTTTATGACGCTTCTGGTAAATTTCGAACTTTGGAAGAGATTTTGATGATCGAGATAAAGCCGGGCTGGAAAAAAGGTACGAAGATCACTTTTCCGGAGAAGGGAAACCAAGAGCCAAATGCCATTCCAGCAGATCTTGTTTTTGTGATAGATGAGAAACCACATTCTTTCTTTAAGCGGGACGGTAACGATCTGGTGATCGATCAAGAACTAACACTTCTAGAAGCTCTCACAGGTAAGACTCTAGAACTCACAACGCTTGATGGAAGAAGTCTTATGATTCCTCTAACCGATATAATAAAACCCAGGACTGAGGTGGTCGTCCCAAATGAAGGGATGCCAAACTCAAAAGAACCGAGTAGGAAGGGGAATTTGAGGATAAATTTCAATGTTAGATATCCGTCAATGCTATCTTTGGATCAAAAATCTGATCTGAAAAGAGTTTTGGGTGGAGTTTCATATTGA 1020 45.98 MGVDYYNILKVNRNASEDDLKKSYRRLARIWHPDKNPVKKREAEAKFKQISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPSQPQPSMSSTRRHHSQNYHHPPPNTTSFRFNPRDADDIYAEFFGPESGAAGGGGGGGGANRTSNGNFGVGSQAKKAAAIENVLSCSLEELYKGAKKKMRISRNVYDASGKFRTLEEILMIEIKPGWKKGTKITFPEKGNQEPNAIPADLVFVIDEKPHSFFKRDGNDLVIDQELTLLEALTGKTLELTTLDGRSLMIPLTDIIKPRTEVVVPNEGMPNSKEPSRKGNLRINFNVRYPSMLSLDQKSDLKRVLGGVSY 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 50976473 50978064 + Bda008580.1 Bda11g01684 16792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01684 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 240 IPR008971 GO:0006457|GO:0051082
Bda11g01684 339 CDD DnaJ 4 59 IPR001623 -
Bda11g01684 339 Gene3D - 240 319 - -
Bda11g01684 339 SMART dnaj_3 3 62 IPR001623 -
Bda11g01684 339 Pfam DnaJ domain 4 67 IPR001623 -
Bda11g01684 339 Gene3D - 159 238 - -
Bda11g01684 339 CDD DnaJ_C 161 322 - -
Bda11g01684 339 SUPERFAMILY Chaperone J-domain 3 86 IPR036869 -
Bda11g01684 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Bda11g01684 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Bda11g01684 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Bda11g01684 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Bda11g01684 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 337 - -
Bda11g01684 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Bda11g01684 339 Gene3D DnaJ domain 3 135 IPR036869 -
Bda11g01684 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 328 IPR008971 GO:0006457|GO:0051082
Bda11g01684 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Bda11g01684 339 PANTHER BNAA06G20720D PROTEIN 2 337 - -
Bda11g01684 339 MobiDBLite consensus disorder prediction 74 113 - -
Bda11g01684 339 Pfam DnaJ C terminal domain 163 319 IPR002939 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01684 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - gmx:100781572 496.123
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g01684 Bda14g00836 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01684 Bda-Chr11:50976473 Bda13g00607 Bda-Chr13:7076504 3.58E-130 dispersed
Bda03g01400 Bda-Chr3:50757835 Bda11g01684 Bda-Chr11:50976473 6.57E-124 transposed
Bda08g00579 Bda-Chr8:5885583 Bda11g01684 Bda-Chr11:50976473 1.04E-14 transposed
Bda10g01039 Bda-Chr10:44460734 Bda11g01684 Bda-Chr11:50976473 1.65E-142 wgd
Bda11g01684 Bda-Chr11:50976473 Bda14g00836 Bda-Chr14:6426495 1.89E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g489 Blo04g00756 Blo16g00200 . . . Bpe13g00271 Bma06g00188 . Cmo13g00951 Cmo18g00102 . . . . . Cpe20g00207 . . . . . . . . . . . . . . . Cone2ag0864 Cone16ag0143 . . . Csa01g00799 Chy12g01317 Cme12g01743 . . Bda11g01684 Bda14g00836 . Bpe15g00616 Bma03g00809 . Sed08g2567 . . . Cma18g00131 Car13g00762 Car18g00123 Cpe09g01061 . Bhi08g01425 Tan05g2072 Cmetu12g0983 Lac10g0382 Hepe07g2276 . . Cla01g01417 Cam01g1483 Cec01g1522 Cco01g1569 Clacu01g1507 Cmu01g1399 Cre01g1319 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006344 2 2 2 2 2 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01684 Bda_Chr11 FPKM 16.262522 15.750826 10.939909 11.79429 9.001069 9.289797 9.614106 26.196688 25.345543