Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01691 ATGGGGAAGTCACCGGCAAAATGGATCAAAGGCATTTTGTTAGGAAAGAAGTCTTCCAAATCTCACATTTCCAAAGGCAGAGAGAAATATACAAATGAGAAACAAGTATTGGTTTCTGCCAAGGACTCAGAAGTTGTTCCGGCTGTGGATGCTCCTGTGCTTTCTCATACATCCGTTGATAAAAATGAAAGGAAGATGGTGGTAAAGAACAATGAAGCTGCAAGTTTATCACGTGACAGAAATGCAGGAAATCAAGATTCAGAAATTCAAGGGTCGACATGCGAAGATTCACTTGTTGATAATGAAAAAATTCGCCGTGAGAAAGCGGCAATTAAGGCTCAGGCTGCTTTTAGGGGTTATTTGGGTCGTCGAGCACTTCGCGCCCTCAGAGGTATTATAAGGTTGCAGGCACTTATAAGAGGGCACTTGGTTAGAAGGCAAGCTGTTGCTACGCTAAGCTGTATGCTGAGAATTGTTAAATTTCAAGCTGTTTTTCGGGGGAGAATCGTGAGACATTCTGATGAAGTGAAAAGAAAATGCATAGTTGTTAAGCCTATGGAACGACCATTAGTTGATCCTGCTGAAGTTAGCCTTTCCGCTCGTGTGGCAAAGTTTTCGGCGAATATTTTTATTTTCAAGTTGGTTGCTTCATCTCCGAATGCAAAGCCTCTTCAGATCCATTATGATACCGAGGATCAAAATTCAGTCTCTAGCTGGTTGGAACGCTGGTCTAAGATCCAATTCTGGAAACCACTTCCCCGACCAAAAAATGTTGCCGAACCCAAATCCCAGAAAAAGCAGGGTAATGGTCAAATTACCGAAGCACAATCTGTCAGATCAAAGCGCACAAGGAGACTTCCTGGGGCTAACAATGACACTGCCTCTATGCAAACGTCCTCTGAAATCGAGAAACCCAAACGAAATCTCAGGAAAGTTTCGGCCCATCCAGTGGATCAGGTGCAGGAAAATCCTCAAAGTGAGCTCGAAAAAGTTAAGCGGAGCTTAAGAAAGGTTCATAGTTCTATACCGGATAACTCTGTACAAATGGAAGCTGAAACCCAAAAGCAAACGGAGACTTTAGAGAAGAGTCCTGGTGCTTCTGGCCTTGAGCTTTTCGAAAGAGGTGCGAATAACTTTAATGAAAAAATGAAGAAAGCTACATCAGTAGTATCCAATGTGTCTAATGAAGAAATAAAACATGAGCCACTAGTGATGGAAGAGATTCTCAATGACCAAGTTGTAGCAGATTTAAAGCCTTTGGAAGAGAACAACAATAAAGATCAAACCACTCCCGGAGAAGATGCTCTCGAGACGAAGGTTTTGACAGAGAACCACAATAACGATGGGAATATTTCAGTCATGAATGAAGAATTGAGCCACAAGGAAGATTCGATGAATGGTGAGAATCAGAAATCTAGCAAGAAAGTTTTGACTCCGGCAAAGCTAGCGGAAAATGGGTTGCAAAATAGTCCCACTTTACCGAGTTACATGGCAGCTACTGAATCTGCAAAGGCAAAGCTAAGAGCACAAGGATCACCCAGGTTGGAACAAGATACTGAAAAGAATAATAATATTGTTCGACGCCACTCTCTTCCATCGTCAACTAATGGCAAAATCAGCTCGCAATCTCCAAGGACCCAAAGACTGGTTCAAACCGGTGGCAAAAGCAGACATAAAAACAAGTCTCATCTTCCTTCAAGGGATGGAAATGGTATGAAAATTTTGAAACGAAACATTACGACGAACGTTAATTTGATTTCGTTCCCCTTATCTCTCTGTGCTATGATCGTTCTCCTCCAAGTACTTATCAATAGCGAACTCGATAAGCCGAGCAACAGGTGTGGTTGTACTTGTATCGATACCAATGGAGATGGTACCTGTGAGGAAGTCTGCGGGATTCAATACTCAACTTTGGCACAAGTTAGCCGATGTCCAATCGAAAGCCCTCCCGAATGGCCTCCATTGCTGCAGATGCCCGGACCTCAATTCCGAGCCGTGAGGTCTGATTTCATTTCGAACACGGACCTGCCTAATGAGTCTTGCCGGAGTACAGGCTCTTGTCCGGCTACGATTCTTTTCACCGGCAATAATCATTCTCTAGGAGAAATTATGACTGGAAGTATGATCCGGAGCACTTTCAATTTGAATTCGTCAAATGTTCTTGATAGTCTCGCTTTCAATGTGGTGGGCTCGGAATCGATGACAGAAACTAACAATTTTATCGAACCGGCTTTCTCTTCAAACCTTTCCATATATAATGCACTACGTCAATGCTCATCAAACTCTACATTATCTGTCTCAATTCCATTATCTACCTCTGTAAGACAACAAGAGATCAAATGTGTTCAAGCTTTGCACTTATGGCGTAATAATATTGCCGAAGTAAACGATGAGCTATACAAAGGATATAGAAAAGGGAATACAGGAAATCAGATCAATGAGATATTGGCAGCTTTCGATTACTCAAACTCAGACGAAAACAACTTTAACACCATTGTTTGGTACAATTCGACTTACAAGAACGACACAGGCAGTGGTCCAATTGCTTTATTGAGGGTCACACGCTCAGTGAATCTGGCATCTAATTCGTACCTCGAGTTCTTACGAGGAGCTGGAACAGAAATTCGTTTTGAGTTTGTCAAAGAAATGCCAAAACCCGGAACTCAACTTCGGTTAGATCTATCTTCTCTGCTTGGCACACTCTTCTTTACATGGGTGATTCTGATGCTATTTCCAGTCGTCTTGACAGCACTGGTTTACGAAAAGGAACAAAAACTGAGAATTATGATGAAAATGCATGGGCTTGGAGATGGACCTTATTGGATGATTACTTATGCTTACTTTCTCATCATTTCTAGGCTGAAATTCTTCACGATGAATGACTACAGCATCCAGTTTGTGTTTTTCTTCATCTACATAAATCTCCAAATCTCTCTGGCCTTTCTATTTGCAGCTTTCTTTTCGAATACCAAAACTGCAGCAGTTATCGCTTACATATGTGTATTCGGAAGTGGTCTCTTAGGCGCTTTTCTCTTCCAGTTCTTTATTCAAGATCCATCGTTTCCGAAGGCCGGGCTAATAGCGTTTGAGCTATATCCCGGGTTTGCTTTATATCGGGGACTGTACGAGTTTGCTCAATATTCCTTCACCGGGAACTATATGGGAACCAACGGGATGCGATGGGGAGATTTAAGCGATAGTGATAATGGAATGAGCGATGTTTTGATCATTATGCTTATAGAGTGGTTAATAATTATCGCGGTTGCATATTATCTTGATCAAGTTGTATCAACGGGAAGCGGGAAGAGTCCTCTATTTTTCTTGCAAAAATTTCGGAAGAGGTCTCCATCGTCTTTCCGAAAGCCTAGTTTGCGGAGGCAAGAATCGAAAGTGTTTGTTCAGATGGAAAAACCCGATGTCAGTCAAGAGAGAGAGAAGGTTGAGCAGTTGTTGATGGAACCAGAGATAAGTCATTCAATTGTCTGTGACAATCTCAAAAAGATGTATCCCGGAAGAGACGGGAACCCTCCGAAATTTGCAGTTCAAGGACTATCTCTTGCCATTCCTCGAGGAGAGTGCTTCGGAATGCTTGGTCCAAACGGTGCCGGAAAGACTTCTTTTATCAGCATGATGATTGGACTCACGAAGCCAAGTGATGGGTCTGCATTTGTGGAAGGGATTGACATAAGGACTCAAATGGATAAAATATACACCAGCATGGGAGTATGCCCGCAACACGACTTGCTCTGGGAAACCCTCACGGGACGGGAGCACCTTCTTTTCTATGGCCGACTTAAGAATCTCCGAGGCTCCGCTTTAACGGAAGCAGTGGAAGAATCTCTAAAAAGTGTGAACTTATACCATGGAGGAGTTGCAGACAGACAAGCTGGAAAGTACAGTGGGGGGATGAAGAGGAGGCTTAGTGTTGCCATTTCGTTGATCGGGGATCCGAGGGTTGTTTACATGGATGAGCCTAGTACCGGACTCGATCCAGCTTCGAGAAATAATTTATGGAATGTTGTTAAGCGCGCAAAACAAGATCGAGCAATTATCCTCACCACACATTCGATGGAAGAGGCCGAGGTGCTGTGTGATCGATTAGGAATTTTCGTAGACGGGAACTTGCAGTGCATTGGAAACCCAAAGGAGCTCAAAGGCAGATATGGCGGATCATATGTTTTCACAATGACAACCCCTTCGGACTACGATCAAGATGTGGAGGACATGGTGAAAAATATCGCTCCCGGAGCTAGCAAGGTCTATCACATTGCAGGGACTCAAAAGTTCGAGCTGCCAAAACATGAAGTGAGAATCAGAGATGTTTTTCAAGCAGTCGAAAATGCCAAGAGCCGGTTCACAGTCTTCGCATGGGGTCTGGCCGACACCACATTGGAAGACGTCTTCATCAAAGTCGCACGCGGGGCTCAGGCATTCAACGTTTTATCGTGA 4449 43.34 MGKSPAKWIKGILLGKKSSKSHISKGREKYTNEKQVLVSAKDSEVVPAVDAPVLSHTSVDKNERKMVVKNNEAASLSRDRNAGNQDSEIQGSTCEDSLVDNEKIRREKAAIKAQAAFRGYLGRRALRALRGIIRLQALIRGHLVRRQAVATLSCMLRIVKFQAVFRGRIVRHSDEVKRKCIVVKPMERPLVDPAEVSLSARVAKFSANIFIFKLVASSPNAKPLQIHYDTEDQNSVSSWLERWSKIQFWKPLPRPKNVAEPKSQKKQGNGQITEAQSVRSKRTRRLPGANNDTASMQTSSEIEKPKRNLRKVSAHPVDQVQENPQSELEKVKRSLRKVHSSIPDNSVQMEAETQKQTETLEKSPGASGLELFERGANNFNEKMKKATSVVSNVSNEEIKHEPLVMEEILNDQVVADLKPLEENNNKDQTTPGEDALETKVLTENHNNDGNISVMNEELSHKEDSMNGENQKSSKKVLTPAKLAENGLQNSPTLPSYMAATESAKAKLRAQGSPRLEQDTEKNNNIVRRHSLPSSTNGKISSQSPRTQRLVQTGGKSRHKNKSHLPSRDGNGMKILKRNITTNVNLISFPLSLCAMIVLLQVLINSELDKPSNRCGCTCIDTNGDGTCEEVCGIQYSTLAQVSRCPIESPPEWPPLLQMPGPQFRAVRSDFISNTDLPNESCRSTGSCPATILFTGNNHSLGEIMTGSMIRSTFNLNSSNVLDSLAFNVVGSESMTETNNFIEPAFSSNLSIYNALRQCSSNSTLSVSIPLSTSVRQQEIKCVQALHLWRNNIAEVNDELYKGYRKGNTGNQINEILAAFDYSNSDENNFNTIVWYNSTYKNDTGSGPIALLRVTRSVNLASNSYLEFLRGAGTEIRFEFVKEMPKPGTQLRLDLSSLLGTLFFTWVILMLFPVVLTALVYEKEQKLRIMMKMHGLGDGPYWMITYAYFLIISRLKFFTMNDYSIQFVFFFIYINLQISLAFLFAAFFSNTKTAAVIAYICVFGSGLLGAFLFQFFIQDPSFPKAGLIAFELYPGFALYRGLYEFAQYSFTGNYMGTNGMRWGDLSDSDNGMSDVLIIMLIEWLIIIAVAYYLDQVVSTGSGKSPLFFLQKFRKRSPSSFRKPSLRRQESKVFVQMEKPDVSQEREKVEQLLMEPEISHSIVCDNLKKMYPGRDGNPPKFAVQGLSLAIPRGECFGMLGPNGAGKTSFISMMIGLTKPSDGSAFVEGIDIRTQMDKIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLRGSALTEAVEESLKSVNLYHGGVADRQAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGNLQCIGNPKELKGRYGGSYVFTMTTPSDYDQDVEDMVKNIAPGASKVYHIAGTQKFELPKHEVRIRDVFQAVENAKSRFTVFAWGLADTTLEDVFIKVARGAQAFNVLS 1482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 51059412 51076904 + Bda008588.1 Bda11g01691 16799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01691 1482 Pfam ABC-2 family transporter protein 809 1090 - -
Bda11g01691 1482 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 573 1482 - -
Bda11g01691 1482 MobiDBLite consensus disorder prediction 511 525 - -
Bda11g01691 1482 MobiDBLite consensus disorder prediction 340 363 - -
Bda11g01691 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1160 1397 IPR003439 GO:0005524
Bda11g01691 1482 MobiDBLite consensus disorder prediction 254 366 - -
Bda11g01691 1482 Gene3D - 1151 1420 IPR027417 -
Bda11g01691 1482 ProSiteProfiles IQ motif profile. 130 157 IPR000048 GO:0005515
Bda11g01691 1482 MobiDBLite consensus disorder prediction 74 92 - -
Bda11g01691 1482 MobiDBLite consensus disorder prediction 507 571 - -
Bda11g01691 1482 ProSitePatterns ABC transporters family signature. 1299 1313 IPR017871 GO:0005524
Bda11g01691 1482 SMART iq_5 128 149 IPR000048 GO:0005515
Bda11g01691 1482 SMART iq_5 105 127 IPR000048 GO:0005515
Bda11g01691 1482 MobiDBLite consensus disorder prediction 262 302 - -
Bda11g01691 1482 Pfam Protein of unknown function (DUF4005) 474 558 IPR025064 -
Bda11g01691 1482 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 573 1482 IPR026082 GO:0016021|GO:0055085|GO:0140359
Bda11g01691 1482 Pfam IQ calmodulin-binding motif 107 127 IPR000048 GO:0005515
Bda11g01691 1482 Pfam IQ calmodulin-binding motif 130 147 IPR000048 GO:0005515
Bda11g01691 1482 CDD ABC_subfamily_A 1164 1385 - -
Bda11g01691 1482 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Bda11g01691 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1160 1388 IPR027417 -
Bda11g01691 1482 MobiDBLite consensus disorder prediction 526 551 - -
Bda11g01691 1482 Pfam ABC transporter 1182 1326 IPR003439 GO:0005524
Bda11g01691 1482 SMART AAA_5 1190 1374 IPR003593 -
Bda11g01691 1482 MobiDBLite consensus disorder prediction 325 339 - -
Bda11g01691 1482 MobiDBLite consensus disorder prediction 72 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01691 - - - csv:101219309 1415.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01691 Bda-Chr11:51059412 Bda14g00841 Bda-Chr14:6479186 0 dispersed
Bda11g01691 Bda-Chr11:51059412 Bda11g01692 Bda-Chr11:51063036 1.67E-74 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01691 Bda_Chr11 FPKM 14.130554 14.787489 20.037178 17.702419 4.14793 4.289756 4.513062 2.516089 2.27737