Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01702 ATGATGTCAGAAAAGAGCAAGCTTCCGTCGAGGTTTATTTTGTCCCTCATAACCATATCCTTGTTTATTTTGATCCTCTCTTCTATGTTCCTTCTACAGTTCAACAATTCTTCTTTGACACCCGGATCAGTATTCAAGCTTATTCTTACTAATACCACTTCAATTTACTCAAAACATAATGACAATAATGAAAGAGTCAAATTTCCATTTAGATCTTTCGGGTCGTCCCAAGATCACTGCGAAGAAGCTGTGAGCGGTGGAGAAATGGCTTGTCAAGTTTTAAAAACTGGCCAGAGAGATGATTCTTCGAGAAAACAGAAAATTTTGGGGTGTGATCCATCTCGGGCTAAATTGAAAGTTTTTATGTATGATTTGCCTCCTGAATTTCACTTTCTATTAATGGGTTGGAAGGGAAAGGAGAACCAAATTTGGCCGGATGTCAAGAATCCAAGACATATTCCACCATATGCAGGCGGGTTGAATTTACAGCACAGTATGGAATATTGGCTTACCCTCGATCTTTTATCATCAAATATCCCAACCATTCCTAGGCCATGTACTGTAATAAGGGTGGCAAACTTGAGCCAAGCTGACGTGATTTTCGTGCCGTTCTTCGCGTCTCTGAGCTATAATCGGTTTAATAAGATTCGTGGAAAAGAAAAGATTAGTGTCAACAAGGTTTTACAGGAGAGGTTGGTAAACTTTCTCACCAGACAAGAGGAATGGAAGAAAACTGGAGGGAAAAATCATGTTATAGTTTCCCACCATCCAAACAGTATGTTGGAAGCAAGAAAGAAACTGGGTTCTGCTATGTTTGTGCTTGCAGATTTCGGGAGGTATCCTGTTGAACTAGCCAATCTCGATAAGGATATTATTGCTCCATATAAGCATTTAGTAAAGACAATTCCACAAGATAAATCTGCTCCGTTCGATGAGCGCCCTACATTAATTTATTTTCAAGGAGAGATATATCGAAAGGATGGAGGAATGATTCGCCAAGAACTGTATTATCTTCTGAAAGACGAGGAAAATGTGCATTTTTCTTTCGGAAATGCCAAAGGAAATGGGGTCCACCAGGCGGAGCAAGGAATGGCCTCATCCAAGTTTTGCCTTAATATCGCTGGAGACACCCCTTCATCGAATCGTCTTTTTGATTCGATTGCTAGTCATTGTGTTCCCGTGATTATCAGCGATGAAATTGAACTCCCGTTTGAAGACGTCTTAGACTACACTGAGTTTTGCATATTTATTCGAGCATCCGATTCGATGAAGAAAGGTTATGTAATGAACCTTCTAAACAGAGTTGGTCGAGAGAGATGGACGAAGATGTGGGAAAGATTGAAGGAAATAGAACATCACTTTGAATATCAATACCCGACTCAAGATGGCGATGCTATTCATATGATCTGGGAAGCAATTTCTCGCAAGTTGTCGACAGTGAGAAATAATAGTAATCGGCAAAACAGATTTAGCAGAGCTCGACTTATACGCAAAAACAATTGA 1503 39.92 MMSEKSKLPSRFILSLITISLFILILSSMFLLQFNNSSLTPGSVFKLILTNTTSIYSKHNDNNERVKFPFRSFGSSQDHCEEAVSGGEMACQVLKTGQRDDSSRKQKILGCDPSRAKLKVFMYDLPPEFHFLLMGWKGKENQIWPDVKNPRHIPPYAGGLNLQHSMEYWLTLDLLSSNIPTIPRPCTVIRVANLSQADVIFVPFFASLSYNRFNKIRGKEKISVNKVLQERLVNFLTRQEEWKKTGGKNHVIVSHHPNSMLEARKKLGSAMFVLADFGRYPVELANLDKDIIAPYKHLVKTIPQDKSAPFDERPTLIYFQGEIYRKDGGMIRQELYYLLKDEENVHFSFGNAKGNGVHQAEQGMASSKFCLNIAGDTPSSNRLFDSIASHCVPVIISDEIELPFEDVLDYTEFCIFIRASDSMKKGYVMNLLNRVGRERWTKMWERLKEIEHHFEYQYPTQDGDAIHMIWEAISRKLSTVRNNSNRQNRFSRARLIRKNN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 51257232 51259535 + Bda008600.1 Bda11g01702 16810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01702 500 Pfam Exostosin family 115 428 IPR040911 -
Bda11g01702 500 PANTHER EXOSTOSIN FAMILY-LIKE PROTEIN 3 489 - -
Bda11g01702 500 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 3 489 IPR004263 GO:0006486|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01702 - - - vvi:100244988 686.797
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02180 Bda-Chr1:57789746 Bda11g01702 Bda-Chr11:51257232 1.33E-102 dispersed
Bda03g01350 Bda-Chr3:48579482 Bda11g01702 Bda-Chr11:51257232 1.92E-58 dispersed
Bda11g01702 Bda-Chr11:51257232 Bda13g01333 Bda-Chr13:35589119 1.45E-17 dispersed
Bda11g01702 Bda-Chr11:51257232 Bda09g01224 Bda-Chr9:43613025 3.14E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g553 . . . . . Bpe13g00294 Bma06g00171 . Cmo13g01186 . . . . . . Cpe20g00018 . . . . . . . . . . . . . . . . Cone16ag0169 . . Lsi02g00073 Csa01g00550 Chy12g01540 Cme12g01992 . . Bda11g01702 . . . . . Sed08g2069 . . Cma13g01133 . Car13g00965 . . . Bhi08g01166 Tan05g2441 Cmetu12g0527 Lac10g0078 Hepe07g2508 . . Cla04g01198 Cam04g1257 Cec01g1768 Cco01g1815 Clacu04g1287 Cmu04g1263 Cre01g1556 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008229 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01702 Bda_Chr11 FPKM 33.762638 33.025826 87.89093 84.916595 97.77562 100.29541 101.979881 86.850113 87.17128