Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01710 ATGTCCGACAGCGAAGATCATCAGTTTGAATCCAAGGCCGACGCCGGCGCTTCCAAAACCTACCCTCAGCAAGCTGGTACTGTTCGCAAGAATGGCTACATCGTCATCAAGGCCCGCCCTTGCAAGGTTGTTGAAGTTTCTACCTCCAAGACTGGAAAACATGGCCATGCTAAGTGCCACTTTGTTGGAATTGACATTTTCACTGGCAAGAAGTTTGATGATATAGTTCCCTCTTCCCATAATTGTGATGTTCCTCATGTTAATCGCACTGATTATCAGCTTATCGATATTTCAGAGGATGGATTTGTGAGCTTGCTGACAGAAAATGGAAACACCAAGGATGATCTGAGGCTCCCAAGTGATGATGGCTTGCTTACCCAGGTTGGTTTAATGCGCATCACATTTACTTTTTTCCTTATTAAGGAGGGTTTTTCTGACGGGAAAGATCTTGTTGTGACTGTGATGTCTGCCATGGGAGAAGAGCAGATTTGTGCTCTGAAGGACATTGGCCCCAAG 516 45.54 MSDSEDHQFESKADAGASKTYPQQAGTVRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKFDDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPSDDGLLTQVGLMRITFTFFLIKEGFSDGKDLVVTVMSAMGEEQICALKDIGPK 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 51423275 51425143 - Bda033164 Bda11g01710 16818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01710 172 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 51 58 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda11g01710 172 PIRSF Transl_init_eIF5A 1 170 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda11g01710 172 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 169 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda11g01710 172 SMART eIF_5a_2 86 167 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda11g01710 172 PANTHER BNAA07G09420D PROTEIN 1 169 - -
Bda11g01710 172 TIGRFAM eIF_5A: translation elongation factor IF5A 18 165 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda11g01710 172 SUPERFAMILY Nucleic acid-binding proteins 87 169 IPR012340 -
Bda11g01710 172 Gene3D - 87 171 IPR012340 -
Bda11g01710 172 SUPERFAMILY Translation proteins SH3-like domain 16 94 IPR008991 -
Bda11g01710 172 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 127 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda11g01710 172 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 140 167 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda11g01710 172 CDD S1_eIF5A 87 169 - -
Bda11g01710 172 MobiDBLite consensus disorder prediction 1 22 - -
Bda11g01710 172 Gene3D - 1 86 IPR014722 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda11g01710 Bda14g00862 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01710 Bda-Chr11:51423275 Bda11g01711 Bda-Chr11:51515960 1.26E-114 tandem
Bda10g01073 Bda-Chr10:44726450 Bda11g01710 Bda-Chr11:51423275 9.70E-102 wgd
Bda11g01710 Bda-Chr11:51423275 Bda14g00862 Bda-Chr14:6643844 7.91E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01710 K03263 - jre:109010735 303.523