Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01711 ATGTCCGACAGCGAAGATCATCAGTTTGAATCCAAGGCCGACGCCGGCGCTTCCAAAACCTACCCTCAGCAAGCTGGTACTGTTCGCAAGAATGGCTACATCGTCATCAAGGCCCGCCCTTGCAAGGTTGTTGAAGTTTCTACCTCCAAGACTGGAAAACATGGCCATGCTAAGTGCCACTTTGTTGGAATTGACATTTTCACTGGCAAGAAGTTTGATGATATAGTTCCCTCTTCCCATAATTGTGATGTTCCTCATGTTAATCGCACTGATTATCAGCTTATCGATATTTCAGAGGATGGATTTGTGAGCTTGCTGACAGAAAATGGAAACACTAAGGATGATCTGAGGCTCCCAAGTGATGATGGCTTGCTTACCCAGATTAAGGAGGGTTTTTCTGACGGGAAAGATCTTGTTGTGACTGTGATGTCTGCCATGGGAGAAGAGCAGATTTGTGCTCTGAAGGACATTGGCCCCAAG 480 46.25 MSDSEDHQFESKADAGASKTYPQQAGTVRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKFDDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPSDDGLLTQIKEGFSDGKDLVVTVMSAMGEEQICALKDIGPK 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 51515960 51517780 - Bda033165 Bda11g01711 16819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01711 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 51 58 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda11g01711 160 SUPERFAMILY Nucleic acid-binding proteins 87 157 IPR012340 -
Bda11g01711 160 Gene3D - 1 86 IPR014722 -
Bda11g01711 160 SUPERFAMILY Translation proteins SH3-like domain 16 94 IPR008991 -
Bda11g01711 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 154 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda11g01711 160 CDD S1_eIF5A 87 157 - -
Bda11g01711 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda11g01711 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda11g01711 160 MobiDBLite consensus disorder prediction 1 22 - -
Bda11g01711 160 SMART eIF_5a_2 86 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda11g01711 160 PIRSF Transl_init_eIF5A 1 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda11g01711 160 PANTHER BNAA07G09420D PROTEIN 1 157 - -
Bda11g01711 160 Gene3D - 87 159 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01480 Bda-Chr7:27504947 Bda11g01711 Bda-Chr11:51515960 2.81E-105 dispersed
Bda10g01073 Bda-Chr10:44726450 Bda11g01711 Bda-Chr11:51515960 1.98E-105 dispersed
Bda11g01711 Bda-Chr11:51515960 Bda14g00862 Bda-Chr14:6643844 1.90E-114 dispersed
Bda11g01710 Bda-Chr11:51423275 Bda11g01711 Bda-Chr11:51515960 1.26E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01711 K03263 - jre:108997403 312.383