Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01719 ATGAATTCCGACAAATTTACCCACAAGACCAGTGAGATGATGGCTGGGGCTCAAGAACTAGCTTTGACTGCTGGCCATGCCCAATTTACTCCCCTTCATCTAGCGGTTTGTTTGATTTCTGATCCTAGTGGAATCTTCAGGCAGGTAGTTGCCAACTCCGGCGAAGAAAACGCTTCAAAAGAGGTGGAGATAGTGTTGAATCGGGCGTTAAAGAAACTCCCATCTCAAACCCCTCCTCCAGAAGATATTCCGGCGAGTTCTACGCTGATCAAAGCAATTACAAGGGCTCAATCGGCGCAAAAAACACGAGGGGACACTCATTTGGCTGTAGATCAGTTGATTTTAGGCCTTCTGGAGGATCATCAAATCGGAGAGCTGTTAAATAAAGCGGGCGTTGTTTCTGCAAAAGTGAAATCCGAGGTCGAGAAGCTTCGTGGAAAAGAGGGGAGGAGAGTGGAGAGTGCTTCAGGCGATTCGACATTTCAAGCTTTGAAGACTTACGGCCGAGATCTCGTCGAGCAAGCCGGAAAACTCGACCCAGTCATCGGCCGAGACGAGGAGATTAGAAGGGTGGTGACGATCTTGTCAAGAAGAACTAAGAACAACCCAGTTCTCATTGGAGAGCCCGGCGTCGGAAAAACAGCAGTGGTGGAAGGATTAGCTCAGAGAATAGTGAAAAGAGACGTCCCAAGTAATCTCGCAGATGTCAAGCTCGTAGCCTTGGACATGGGAGCTTTAGTTGCAGGAACCAAATATCGGGGAGAGTTTGAGGGGCGGCTGAAAGCGGTTTTGAAAGAGGTAGAAGATTCAGAGGGAAGAATAATCTTGTTCATAGACGAGATTCACTTAGTCCTCGGCGCCGGCCGCACAGAGGACGTCGCCATGGACGCCGCAAATCTCTTAAAGCCAATGCTTGCCAGAGGGCAGCTCCGGTGCATCGGAGCAACAACCCTCGACGAATACCGGAAGTACGTCGAGAAAGACGCCGCATTTGAGCGACGATTTCAACAGGTATTCGTCGCTGAACCGAGCGTCCAAGATACAGTCAGTATTCTTCGAGGTTTGAAGGAGAGATACGAAGGCCATCATGGCGTGAGAATCCAAGACAGAGCTCTGATCGTTGCAGCTCAGCTCTCCGACAGATATATTACTGGTCGCCGTCTTCCTGACAAGGCGATAGACCTAGTTGACGAAGCTTGCGCAAACGTTAGAGTACAGCTTGATAGTCAGCCGGAGGACATTGATAACCTGGAAAGAAAGAGAATGCAACTGGAAATCGAGCTTCATGCTCTTGAAAAAGAGAAGGATAAAGCTAGCAAAGCTCGTCTGGTTGAAGTGAGAAAAGAGCTAGATGATCTAAGAGATAAGCTTCAGCCTCTATTGATGAAATATCAGAAGGAGAAAGAGAGGATCAATGAGATTCGAAGATTGAAACAGAGAAGGGAAGAGCTTCAGATTGCGTTACAGGCGGCGGAAAGAAGATACGATTTAGCCAGAGCGGCGGATCTGCGATACGGCGGAATTCAGGAGGTGGAAACCGCCATTGCACGAATCGAAGGTATCACCGGCGAGAATTTAATGCTGACGGAGACCGTCGGACCTGAACACATAGCTGAGGTGGTAGCGCGGTGGACTGGTATTCCGGTCACGAGGCTTGGTCAGAACGAGAAAGAAAGACTGATTGGGCTCGGAGAGAGGCTGCAGAGGAGAGTCGAGAGCGGGTCTGGGAAGGCCCCAACAGCCGACTGGCTCGTTCCTCTTTCTGGGTCCGACCGGCGTCGGAAAAACTGA 1791 49.92 MNSDKFTHKTSEMMAGAQELALTAGHAQFTPLHLAVCLISDPSGIFRQVVANSGEENASKEVEIVLNRALKKLPSQTPPPEDIPASSTLIKAITRAQSAQKTRGDTHLAVDQLILGLLEDHQIGELLNKAGVVSAKVKSEVEKLRGKEGRRVESASGDSTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVTILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKRDVPSNLADVKLVALDMGALVAGTKYRGEFEGRLKAVLKEVEDSEGRIILFIDEIHLVLGAGRTEDVAMDAANLLKPMLARGQLRCIGATTLDEYRKYVEKDAAFERRFQQVFVAEPSVQDTVSILRGLKERYEGHHGVRIQDRALIVAAQLSDRYITGRRLPDKAIDLVDEACANVRVQLDSQPEDIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLLMKYQKEKERINEIRRLKQRREELQIALQAAERRYDLARAADLRYGGIQEVETAIARIEGITGENLMLTETVGPEHIAEVVARWTGIPVTRLGQNEKERLIGLGERLQRRVESGSGKAPTADWLVPLSGSDRRRKN 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 51627060 51629059 + Bda008616.2 Bda11g01719 16827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01719 596 Gene3D - 345 545 IPR027417 -
Bda11g01719 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 546 IPR027417 -
Bda11g01719 596 SUPERFAMILY Double Clp-N motif 4 158 IPR036628 -
Bda11g01719 596 CDD AAA 182 343 - -
Bda11g01719 596 PANTHER ATP-DEPENDENT CLP PROTEASE 3 579 - -
Bda11g01719 596 Pfam AAA lid domain 344 444 IPR041546 -
Bda11g01719 596 Coils Coil 464 501 - -
Bda11g01719 596 MobiDBLite consensus disorder prediction 571 596 - -
Bda11g01719 596 Gene3D - 2 148 IPR036628 -
Bda11g01719 596 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Bda11g01719 596 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 3 579 - -
Bda11g01719 596 Pfam ATPase family associated with various cellular activities (AAA) 204 321 IPR003959 GO:0005524|GO:0016887
Bda11g01719 596 Coils Coil 407 456 - -
Bda11g01719 596 Gene3D - 150 344 IPR027417 -
Bda11g01719 596 ProSitePatterns Chaperonins clpA/B signature 1. 296 308 IPR018368 GO:0005524
Bda11g01719 596 SMART AAA_5 199 345 IPR003593 -
Bda11g01719 596 Pfam Clp amino terminal domain, pathogenicity island component 17 56 IPR004176 -
Bda11g01719 596 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01719 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 950.273
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g01719 Bda14g00871 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01719 Bda-Chr11:51627060 Bda14g00871 Bda-Chr14:6743680 0 dispersed
Bda11g01719 Bda-Chr11:51627060 Bda14g00870 Bda-Chr14:6725817 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01719 Bda_Chr11 FPKM 31.126865 37.140236 30.847088 26.879642 61.663418 32.113472 48.881229 59.895161 63.276924