Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01751 GACATAGTGGGGAAGTCCAAAAAAGATGCTTCGCTTCCGAAAGCAACAATGACCAAAATTATCAAGGAGATGCTCCCACATGATGTGTGCGTCGTGAGGGATACTCAGGATCGTCTGATCGAGCAGTTTATAAGCCTTCTATCATCAGAGTCTAATGAAGTTTGTTACAAAGAAGAGAGAGGAACAATTGCTCCTGAGCATGTGTTCAAGGCTTTGGAGGTTCTCTGTTTTGGCAATTACATCGAGGAAGTTTTCGCTGTTTATGAACAACACAAGCTCAAAACTATGCAGGACTCTTTGAAAAGTGGGAAGTGGAGCGACGGAGGGAAAATGCTAGAGGAAGAAGCTATCGCTGAACAGCAGAGATTGTTCGCAGAGGCACGGGCAAGAATGAACGGCGGTGTCGCTCAACTCAAGCATTCGGATTCAAACCAAAGTTTAGAGAACTAA 450 44.67 DIVGKSKKDASLPKATMTKIIKEMLPHDVCVVRDTQDRLIEQFISLLSSESNEVCYKEERGTIAPEHVFKALEVLCFGNYIEEVFAVYEQHKLKTMQDSLKSGKWSDGGKMLEEEAIAEQQRLFAEARARMNGGVAQLKHSDSNQSLEN 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 52275714 52277620 + Bda008662.1 Bda11g01751 16859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01751 149 Gene3D Histone, subunit A 3 137 IPR009072 GO:0046982
Bda11g01751 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 72 IPR003958 -
Bda11g01751 149 PANTHER PROTEIN DR1 HOMOLOG 1 148 IPR044255 -
Bda11g01751 149 SUPERFAMILY Histone-fold 9 135 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01751 K21751 DR1, NC2-beta; down-regulator of transcription 1 - qsu:111987282 219.164
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01751 Bda-Chr11:52275714 Bda15g00650 Bda-Chr15:9955655 2.58E-75 dispersed
Bda11g01751 Bda-Chr11:52275714 Bda11g01756 Bda-Chr11:52332330 2.78E-67 proximal
Bda11g01751 Bda-Chr11:52275714 Bda14g00905 Bda-Chr14:7036190 3.24E-78 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00650 CCT 13 157 CCAAT-DR1 Transcription Factor Family AT5G08190 84.1 8.3e-64 240.0
Bda14g00905 CCT 1 148 CCAAT-DR1 Transcription Factor Family AT5G08190 81.1 2.7e-62 235.0
Bda11g01751 . 1 135 CCAAT-DR1 Transcription Factor Family AT5G08190 73.2 2.4e-47 185.3
Bda15g00650 CCT 13 157 CCAAT-DR1 Transcription Factor Family AT5G23090 85.5 6.0e-67 250.4
Bda14g00905 CCT 1 148 CCAAT-DR1 Transcription Factor Family AT5G23090 83.2 3.1e-63 238.0
Bda11g01751 . 1 145 CCAAT-DR1 Transcription Factor Family AT5G23090 70.0 3.9e-50 194.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16727 PF00808 CBFD_NFYB_HMF 1.40E-10 CL0012 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01751 Bda_Chr11 FPKM 21.784225 23.901381 4.348867 4.89247 12.63826 10.109747 12.15286 0.593915 0.6597