Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g01751 | GACATAGTGGGGAAGTCCAAAAAAGATGCTTCGCTTCCGAAAGCAACAATGACCAAAATTATCAAGGAGATGCTCCCACATGATGTGTGCGTCGTGAGGGATACTCAGGATCGTCTGATCGAGCAGTTTATAAGCCTTCTATCATCAGAGTCTAATGAAGTTTGTTACAAAGAAGAGAGAGGAACAATTGCTCCTGAGCATGTGTTCAAGGCTTTGGAGGTTCTCTGTTTTGGCAATTACATCGAGGAAGTTTTCGCTGTTTATGAACAACACAAGCTCAAAACTATGCAGGACTCTTTGAAAAGTGGGAAGTGGAGCGACGGAGGGAAAATGCTAGAGGAAGAAGCTATCGCTGAACAGCAGAGATTGTTCGCAGAGGCACGGGCAAGAATGAACGGCGGTGTCGCTCAACTCAAGCATTCGGATTCAAACCAAAGTTTAGAGAACTAA | 450 | 44.67 | DIVGKSKKDASLPKATMTKIIKEMLPHDVCVVRDTQDRLIEQFISLLSSESNEVCYKEERGTIAPEHVFKALEVLCFGNYIEEVFAVYEQHKLKTMQDSLKSGKWSDGGKMLEEEAIAEQQRLFAEARARMNGGVAQLKHSDSNQSLEN | 149 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 52275714 | 52277620 | + | Bda008662.1 | Bda11g01751 | 16859 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g01751 | 149 | Gene3D | Histone, subunit A | 3 | 137 | IPR009072 | GO:0046982 | |
Bda11g01751 | 149 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 10 | 72 | IPR003958 | - | |
Bda11g01751 | 149 | PANTHER | PROTEIN DR1 HOMOLOG | 1 | 148 | IPR044255 | - | |
Bda11g01751 | 149 | SUPERFAMILY | Histone-fold | 9 | 135 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g01751 | Bda-Chr11:52275714 | Bda15g00650 | Bda-Chr15:9955655 | 2.58E-75 | dispersed | |
Bda11g01751 | Bda-Chr11:52275714 | Bda11g01756 | Bda-Chr11:52332330 | 2.78E-67 | proximal | |
Bda11g01751 | Bda-Chr11:52275714 | Bda14g00905 | Bda-Chr14:7036190 | 3.24E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16727 | PF00808 | CBFD_NFYB_HMF | 1.40E-10 | CL0012 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g01751 | K21751 | - | qsu:111987282 | 219.164 |