Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01765 ATGCAGAGAATATTTTATCGGAGGCTTGTTTTGAAGCGCTCAGACGACTCCTACTCTTTGCAAGCTTGCAAAACATTCACTTCCCTCGCCAAACCAGTACAAACCTGTCACCGAAATCTTCTCTTCAGCTCCTCAATCAATCACCCTGTTCACCCCCATTGGCGATCATGGGAGTCGCGTCATAGATTTGCAGAGAGGGTTTATGGGTTTCTGTCGACCCCGGAGATCGCGAAGCAGTTCTCGATGGGTTCCTCGAACACCCTTTTGAGGGCTTCGAGAAAGAGTATTGCAGATTTCAGAGTTTGCTTTCTTAGAGCTAAAATGTCTGGACAAAGTTTTCAGTTCAATCCACGTTTTGAAAATTACTCGCGTGGCTGGAGATCATGGTTTCGAAGGCTAACAACTAATGACATGGTTTTGGGCTTGATCATAACTAATGTTGCTGTTTTTATGTTGTGGAGGATTGCCGACTCTAGATTTATGTCAAAAAACTTTATGATCTCTTTGGAAAATGTTAAAAGTGGGCGAGTGCATACAATGATCACCTCTGCCTTCAGCCATATTGACACTGGGCATATCATTTCTAACATGATTGGTTTATACTTCTTTGGGATGAATATTGGACGCATGTTTGGACCTGAGTTCTTATTGAAGTTATATCTAGCTGGGGCATTAGGTGGTTCAGTCTTTTACTTAGCGTATAATGCCATTCTAGCATCATCCTCAAAGGACCGACATTTCCTGGGCAATGATCCTTCGAGGGCACGAGGACTGGGGGCAAGCGGCGCCGTGAACGCCATCATGCTACTCGATATATTCCTCTTTCCAAAATCAACCCTCTATCTTGAGTTCTTCATACCCGTTCCTGCCATTTTGCTAGGAATCTTCCTCATTGGGAAAGATTTATTAAGAACATTGAAGAAAGATAGCCATATTTCAGGAGCTGCTCACTTGGGAGGTGCTGTAGTTGCAGCCTTAGCTTGGACAAGACTACGCAGAGGACGTTTTTGA 1011 43.92 MQRIFYRRLVLKRSDDSYSLQACKTFTSLAKPVQTCHRNLLFSSSINHPVHPHWRSWESRHRFAERVYGFLSTPEIAKQFSMGSSNTLLRASRKSIADFRVCFLRAKMSGQSFQFNPRFENYSRGWRSWFRRLTTNDMVLGLIITNVAVFMLWRIADSRFMSKNFMISLENVKSGRVHTMITSAFSHIDTGHIISNMIGLYFFGMNIGRMFGPEFLLKLYLAGALGGSVFYLAYNAILASSSKDRHFLGNDPSRARGLGASGAVNAIMLLDIFLFPKSTLYLEFFIPVPAILLGIFLIGKDLLRTLKKDSHISGAAHLGGAVVAALAWTRLRRGRF 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 52479432 52482407 - Bda008685.1 Bda11g01765 16873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01765 336 Pfam Rhomboid family 172 332 IPR022764 GO:0004252|GO:0016021
Bda11g01765 336 PANTHER RHOMBOID PROTEASE 15 333 - -
Bda11g01765 336 PANTHER RHOMBOID-LIKE PROTEIN 12, MITOCHONDRIAL 15 333 - -
Bda11g01765 336 Gene3D - 132 334 IPR035952 -
Bda11g01765 336 SUPERFAMILY Rhomboid-like 137 333 IPR035952 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01765 - - - csv:101205793 415.231
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g453 . . . . . . . . Cmo13g01111 . . . . . . Cpe20g00083 . . . . . . . . . . . . . . . . Cone16ag0216 . . Lsi02g00129 Csa01g00612 Chy12g01488 Cme12g01929 . . Bda11g01765 . . . . . Sed08g2128 . . Cma13g01067 . Car13g00902 . . . Bhi08g01072 Tan05g2345 Cmetu12g1181 Lac10g0175 Hepe07g2452 . . Cla04g01146 Cam04g1200 Cec01g1712 Cco01g1756 Clacu04g1227 Cmu04g1207 Cre01g1504 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013453 1 1 0 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01765 Bda_Chr11 FPKM 40.332241 41.58989 22.811945 22.924133 28.668356 27.912268 32.359661 51.616291 52.291214