Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01767 ATGGAGAACAACTTGGAGCCGACGCTGCAAGATGGGAAGCTCCTCCGGCAGGTCAATTCTCTCATTGTCGCTCATCTTCGCCACCATAATCTCAACCAGGCAAGCTTTGCTTCAGCGACCATGACACCATTTGATGTCAATGTTCCATCTAACAAGCTCCTTGAGCTGGTTGCTAAGGGTCTTGCAGTGGAAAAAGATGAGTTGATAAAGGGAACTTCTGCCTCCGCAGGATATGATTTGGGTTCATCGATACCGTCTGCATATGGGTCTACCCCGCCTCCTCGGATTTCTGCAGTCGACTTCAGTTTGGTGCAGGACTTGAAAGGGTCGTCGAAGAGTTTCCCAAAACATGAAACACGCCATCTCTCTGAGCACAAGAATGTTGCTAGATGTGCAAGATTTAGTCGCGATGGGAGATTTGTGGCCACTGGTAGTGCCGATTTATCCATAAAACTCTTTGAGGTGGTAAAAGTTAAGCAAATGCTACTTCTAGAAACAAGAGAGGGGCCTGTTCGACCTGTTATTCGGACATTTTACGACCATATTCAGCCCGTAAATGATCTGGATTTTCATCCTCAAAACACGATTCTTATATCCGGGGCAAAAGACCACACAATAAAGTTCTTTGACTTTTCCAAAATGTCTGCAAAAAAAGCATTCAAAGTCATCCAGGATACCCACAATGTACGTTCAGTCACTTTCCACCCTTCTGGGGAGTATCTTTTGGCAGGAACTGACCATCCCATTGCGCATTTGTATGATGTAAATACGTTTCAATGCTATCTTTGTTCAAATGTCCCAGAAATAGGAAAAGTTAGGTATTCAGCAACGGGTAGCATGTATGTTACAGCTTCAAAAGATGGAGCCGTTCGATTATGGGATGGGGTAAGTGCTAATTGTGTTCGATCCATCGCTGGGGCCCACGGAACGTCTGAGATTACTAGTGCGAATTTTACGAAAGATCAGAGGTTTGTTCTTTCTTGTGGGAAGGATTCTACTGTAAAGCTTTGGGAAGTTGGGAGTGGGAGGCTGGTTAAACAGTATCTTGGAGTGACCCACACACAGTTGCGATGCCAGGCTGTTTTTAATGACAGCGAGGAATTTGTGCTGTCAATAGATGAGGCGACCAATGAGATTGTTGTCTGGAATGCTCTGTCGGCTGAAAAAGTAGCAAGATGGCCTTCAAACCATATCGGTGCACCACGATGGCTCGAACATTCTCCAACGGAGGCGGCTTTTGTCTCCTGCGGAACTGACAAATCGGTTCGCTTCTGGAAAGAAGCTCTCTAA 1290 45.66 MENNLEPTLQDGKLLRQVNSLIVAHLRHHNLNQASFASATMTPFDVNVPSNKLLELVAKGLAVEKDELIKGTSASAGYDLGSSIPSAYGSTPPPRISAVDFSLVQDLKGSSKSFPKHETRHLSEHKNVARCARFSRDGRFVATGSADLSIKLFEVVKVKQMLLLETREGPVRPVIRTFYDHIQPVNDLDFHPQNTILISGAKDHTIKFFDFSKMSAKKAFKVIQDTHNVRSVTFHPSGEYLLAGTDHPIAHLYDVNTFQCYLCSNVPEIGKVRYSATGSMYVTASKDGAVRLWDGVSANCVRSIAGAHGTSEITSANFTKDQRFVLSCGKDSTVKLWEVGSGRLVKQYLGVTHTQLRCQAVFNDSEEFVLSIDEATNEIVVWNALSAEKVARWPSNHIGAPRWLEHSPTEAAFVSCGTDKSVRFWKEAL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 52500890 52505129 - Bda008687.1 Bda11g01767 16875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01767 429 Gene3D - 106 428 IPR015943 GO:0005515
Bda11g01767 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Bda11g01767 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 212 - -
Bda11g01767 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 155 IPR001680 GO:0005515
Bda11g01767 429 SMART WD40_4 259 294 IPR001680 GO:0005515
Bda11g01767 429 SMART WD40_4 171 210 IPR001680 GO:0005515
Bda11g01767 429 SMART WD40_4 216 254 IPR001680 GO:0005515
Bda11g01767 429 SMART WD40_4 386 426 IPR001680 GO:0005515
Bda11g01767 429 SMART WD40_4 115 154 IPR001680 GO:0005515
Bda11g01767 429 SMART WD40_4 297 338 IPR001680 GO:0005515
Bda11g01767 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Bda11g01767 429 SUPERFAMILY WD40 repeat-like 114 426 IPR036322 GO:0005515
Bda11g01767 429 CDD WD40 118 426 - -
Bda11g01767 429 Pfam WD domain, G-beta repeat 226 294 IPR001680 GO:0005515
Bda11g01767 429 Pfam WD domain, G-beta repeat 175 210 IPR001680 GO:0005515
Bda11g01767 429 Pfam WD domain, G-beta repeat 119 153 IPR001680 GO:0005515
Bda11g01767 429 Pfam WD domain, G-beta repeat 299 337 IPR001680 GO:0005515
Bda11g01767 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 303 IPR001680 GO:0005515
Bda11g01767 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 347 IPR001680 GO:0005515
Bda11g01767 429 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Bda11g01767 429 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Bda11g01767 429 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Bda11g01767 429 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 2 428 IPR044633 GO:0005848|GO:0031124
Bda11g01767 429 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01767 K14406 CSTF1; cleavage stimulation factor subunit 1 - jre:108996656 728.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01767 Bda-Chr11:52500890 Bda04g00146 Bda-Chr4:3969533 8.55E-26 dispersed
Bda06g00087 Bda-Chr6:930717 Bda11g01767 Bda-Chr11:52500890 1.31E-06 transposed
Bda11g01734 Bda-Chr11:52001153 Bda11g01767 Bda-Chr11:52500890 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01767 Bda_Chr11 FPKM 17.774246 21.83902 11.624665 13.23806 3.740573 4.845102 4.680899 6.950643 7.976839