Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01770 ATGAGATCTTCTTCGCAGAAAATCAACATCGCTGCAAGAACTCAGAGGCTTGATGTTGATAACTGTATTTCTCTGCGTTATTACTGTAGGATTGCTGATAATATCCTCATGCAGGCTGACATCTTTCGAGCGGAGAGGAATCTAATAGATCTTTATGTTATGTTACTGAGATTTTCAAGTTTGGTCAGTGAGACGATACCATGCCATCAAAATTATGACTCGTCTCCTCAAAGTCAAAAAACTTATTTGAAAAAGAGATTGATGATTACCTTGAGGGAGCTGGAAGAATTGAAGCCAGCAGTGCAACGAAGGGTTGACGAGTTAAATGCAAAACAAGTATCTCAAATAAATGGGTGGGATAATCACCAACAAAATAGTTCACTCGAATGGCCTTCTGTTAGTAGACAAAGTTCTGGCTGCAATGATATTGCTAAGACATCTGGACCAGTTGTGAGAGACATTTCACGTCGAGGTTCCAGGTCGCAGCAGCTTTCATATTCAAAACCCATGGAAGAACAATTCCGCAAATTGTCTCTTGCTATCCCGCGTCCAAAAGAGGAAACACTTTCTCGTCATTCTATTTTGGGCCCAAATGGGCTTCATGGTCAGTGGCAGCCACCGATTGTCAATAAAGGAGTTCAATATCCAAGTATTGCAGACTTAACTTCTGTTGACATTCCGAGTGTACAACATTATTTAGAAAACGAGCTTGTGATTGAAAAAGATCATGGCAACTCAGAAAACAAAGAATTAGATCTGGAGTCCCTTCCTACTCCAAATGAAGATAGTCAGACACATGATGTGGATAAACCTAGTTGCTTGATCTCCTTTGAAACAATGGAAAATTCTGAACCTAATGATATAATCCGACAGCCTTCTCCTCCTCCTGTACTCGCTGAAGTGCAGGATTTGATACCTGCAGTGTCATGCCAAGTTACTGAGGTAGAATGTGCAGTGGCGGCTCCCTCATCAGATGGTTTTGTTCACGTTGAAGCTTCCTTACAGTTGCATATTTCAACGAGCATGATGGATAATTTTTTGAGACTAGCAAAGTCAAATACGGATAAGAACTTAGAAACTTGTGGTGTTATTGCTGGTTTACTTAAAAACAAAATATTTTATGTGACCACTCTGATCATACCAAAGCAGGAATCAACATCAAATACTTGTCAGACCACAAATGAGGAGGAGATATTTGAATTGCAAGATAAACAATCCCTTTTCCCGCTTGGCTGGATTCATACACATCCATCTCAGTCATGCTTCATGTCATCTGTTGATCTTCACACGCATTATTCTTATCAGATTATGTTGCCAGAATCAGTTGCAATTGTGATGTCACCTAAAGATATCTCGAGAAAACATGGTATTTTTCGGTTGACTGCACCTGGCGGCATGTCGGTTATCAGGCAATGCCAGCAACGTGGGTTCCACCCACACAGTCAGCCTCCAGATGGTGGCCCCATCTACCAAACATGTACAGATGTCTACATGGACCCCACTCTAAGATTCGATGTTGTTGATCTTCGATAA 1533 41.03 MRSSSQKINIAARTQRLDVDNCISLRYYCRIADNILMQADIFRAERNLIDLYVMLLRFSSLVSETIPCHQNYDSSPQSQKTYLKKRLMITLRELEELKPAVQRRVDELNAKQVSQINGWDNHQQNSSLEWPSVSRQSSGCNDIAKTSGPVVRDISRRGSRSQQLSYSKPMEEQFRKLSLAIPRPKEETLSRHSILGPNGLHGQWQPPIVNKGVQYPSIADLTSVDIPSVQHYLENELVIEKDHGNSENKELDLESLPTPNEDSQTHDVDKPSCLISFETMENSEPNDIIRQPSPPPVLAEVQDLIPAVSCQVTEVECAVAAPSSDGFVHVEASLQLHISTSMMDNFLRLAKSNTDKNLETCGVIAGLLKNKIFYVTTLIIPKQESTSNTCQTTNEEEIFELQDKQSLFPLGWIHTHPSQSCFMSSVDLHTHYSYQIMLPESVAIVMSPKDISRKHGIFRLTAPGGMSVIRQCQQRGFHPHSQPPDGGPIYQTCTDVYMDPTLRFDVVDLR 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 52548520 52553234 + Bda008690.1 Bda11g01770 16878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01770 510 ProSiteProfiles MPN domain profile. 336 466 IPR037518 -
Bda11g01770 510 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 332 439 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bda11g01770 510 SUPERFAMILY JAB1/MPN domain 335 466 - -
Bda11g01770 510 Gene3D - 2 129 - -
Bda11g01770 510 SUPERFAMILY USP8 N-terminal domain-like 22 114 - -
Bda11g01770 510 Gene3D Cytidine Deaminase, domain 2 328 510 - -
Bda11g01770 510 PANTHER AMSH-LIKE PROTEASE 1 510 - -
Bda11g01770 510 Coils Coil 91 111 - -
Bda11g01770 510 Pfam USP8 dimerisation domain 10 103 IPR015063 -
Bda11g01770 510 SMART pad1_6 335 463 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bda11g01770 510 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 1 510 - -
Bda11g01770 510 MobiDBLite consensus disorder prediction 243 268 - -
Bda11g01770 510 CDD MPN_AMSH_like 335 510 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01770 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - qsu:112032297 699.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00376 Bda-Chr8:3845704 Bda11g01770 Bda-Chr11:52548520 1.54E-160 dispersed
Bda11g01770 Bda-Chr11:52548520 Bda11g01789 Bda-Chr11:52826062 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g306 Blo04g00830 . . . . Bpe13g00355 Bma06g00047 . Cmo13g01061 Cmo18g00038 . . . . . Cpe20g00126 . . . . . . . . . . . . . . . . . Cone13ag0305 . Lsi02g00186 Csa01g00669 Chy12g01434 Cme12g01872 . . Bda11g01770 . . . Bma03g00896 . Sed08g2186 . . Cma13g01020 Cma18g00045 Car13g00854 Car18g00039 Cpe09g01135 . Bhi08g01239 Tan05g2262 Cmetu12g0605 Lac10g0242 Hepe07g2388 . . Cla04g01086 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005782 2 1 1 3 1 1 2 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01770 Bda_Chr11 FPKM 14.515221 15.914768 15.949871 16.379099 24.979528 26.146631 24.708801 16.243511 16.538683