Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01773 ATGGTAGGCACAACACTAAAATTTTCAACAGCTTATCATCCCCAAGACTTGATTCTCCCCACCGCTCAGATTGCATATAATAGCTCTGTGAACCGATCCATAGTTATGAGTCCTTTTGAAGTGTTCACACCCGAAAGGGATTTCACAATTAAAATTTCTGGCCTGGAAATTTATAACGAGAATGTTAAGGACCTTTTAAATTCAGAATCTGGTCGCAATCTTAAGCTACTTGATGATCCAGAGAAAGGTACAGTAGTGGAGAAGTTAATAGAGGAAACTGCCAGCAATGATCAGCACTTAAGACAGATGACTAGTATATGCGAGGCTCAAAGACAAGTTGGTGAAACTGCTTTAACTGACAACAGCTCACGGTCACACCAGATAATAATAAGGCTGTCCATCCAAAGTACTCTGCGTGAAAATTCAGATTGTGTGAGATCTTTCGTGGCAAGCTTGAACTTTGTTGATCTTGCTGGAAGTGAAAGAGCCTCCCAGACGCATGCAGATGGCTCTAGGCTAAAAGAAGGCTGCCATATCAACCTTAGCTTGATGACACTTACAACTGTAATCAGAAAGCTCAGACAATTCAAACGGGAAAGAGAATTTCTCGCTAAACATGCACTGTACATGAAATGGGATGTGCCACTTGAAGGAAAGCATAGAAGGATACAATTTGTTAACAAGCTTTGGATGGATCCACACAATCCAAAACATATTCAAGAGAGTGCAGAAATAGTGGCATTGCTTGTAGGCTTCTGTGAAGGTGGAAACATGTCAAAAGAGATGTTTGAGCTCAACTTTGTAGTTCCTTCTGATAAGAGGTCATGGCTAATTGGATGGAATCCAATCTCAAACCTTCTTCACTTGTGA 870 40.8 MVGTTLKFSTAYHPQDLILPTAQIAYNSSVNRSIVMSPFEVFTPERDFTIKISGLEIYNENVKDLLNSESGRNLKLLDDPEKGTVVEKLIEETASNDQHLRQMTSICEAQRQVGETALTDNSSRSHQIIIRLSIQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGSRLKEGCHINLSLMTLTTVIRKLRQFKREREFLAKHALYMKWDVPLEGKHRRIQFVNKLWMDPHNPKHIQESAEIVALLVGFCEGGNMSKEMFELNFVVPSDKRSWLIGWNPISNLLHL 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 52582826 52603139 + Bda008694.1 Bda11g01773 16881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01773 289 PANTHER CENTROMERE PROTEIN E 194 288 - -
Bda11g01773 289 ProSitePatterns Kinesin motor domain signature. 150 161 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bda11g01773 289 Pfam Domain of unknown function (DUF3490) 194 269 IPR021881 -
Bda11g01773 289 ProSiteProfiles Kinesin motor domain profile. 1 289 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g01773 289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 198 IPR027417 -
Bda11g01773 289 SMART kinesin_4 2 241 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g01773 289 Pfam Kinesin motor domain 45 196 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g01773 289 PANTHER KINESIN-LIKE PROTEIN KIN-7A 194 288 - -
Bda11g01773 289 PANTHER KINESIN-LIKE PROTEIN KIN-7A 42 198 - -
Bda11g01773 289 PRINTS Kinesin heavy chain signature 116 133 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g01773 289 PRINTS Kinesin heavy chain signature 151 169 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g01773 289 PANTHER CENTROMERE PROTEIN E 42 198 - -
Bda11g01773 289 Gene3D Kinesin motor domain 24 226 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01773 K11498 CENPE; centromeric protein E - fve:101315243 277.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01773 Bda-Chr11:52582826 Bda08g00962 Bda-Chr8:18886273 1.25E-14 dispersed
Bda11g01773 Bda-Chr11:52582826 Bda14g00920 Bda-Chr14:7253216 2.32E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g285 Blo04g00833 Blo16g00131 . . . Bpe13g00360 Bma06g00050 . Cmo13g01049 Cmo18g00040 . . . . . Cpe20g00132 . . . . . . . . . . . . . . . . . . . Lsi02g00207 Csa01g00689 Chy12g01421 Cme12g01857 . . Bda11g01773 . . Bpe15g00531 Bma03g00900 . . . . Cma13g01010 Cma18g00049 Car13g00845 Car18g00043 Cpe09g01132 . Bhi08g01257 . . . . . . Cla04g01075 Cam04g1119 Cec01g1632 Cco01g1678 Clacu04g1145 Cmu04g1126 Cre01g1427 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017232 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01773 Bda_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0