Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01787 ATGTTCCAGGTAATGATTCTCTCTATCTCTAGAATCTTGTTTGTTGCTAGCAATGGCGGTTTCTCTGATTTTCTCTTTGCAGAATGGGTCTCTGCTACCACTGTAACTTTTTACAACGAATGCAGCCACCCAGTTTGGCCGGGTATCCAGCCAAGTGCCGGAAAACCCGTCGTAGCTCGCGGCGGTTTCTCTCTCCGACCGAAAAAGGCTTTCTCCCTCCATCTCCCTTCCCTCTGGTCTGGCCGATTCTGGGGCCGTCACGGATGCTCCTTCGATTCCACAGGCAAAGGAAAATGTGCCACCGGAGACTGCGGCGGTTCCCTCTTCTGCAACGGCGTCGGCGGTGCTCCTCCGGCGACGCTAGCAGAAATCACCCTGGGCAACGACCAGGACTTCTACGACGTCAGCCTGGTGGACGGCTACAACCTAGCCATCTCCATCACGCCGGTGAAAGGCTCCGGCAAGTGCAGCTACGCCGGCTGCGTAAGGGACCTGAATATGATATGTCCGGTGGGTCTGCAAGTTAGATCTCACGTTAACGAACAAGTGGTCGCCTGTAAAAGCGCTTGTTCGGCTTTTAACTCGCCGAGATATTGCTGCACCGGCAGGTTCGGCAGTCCTCAGTCGTGTAAACCGACGGCGTACTCCAGGATTTTCAAGGCGGCTTGCCCGAAAGCTTATTCCTACGCTTATGATGATCCGACCAGCATTGCTACTTGTACCGGCGGAAACTATCTGGTCACTTTTTGCCCTCGCCATCACTAG 765 54.38 MFQVMILSISRILFVASNGGFSDFLFAEWVSATTVTFYNECSHPVWPGIQPSAGKPVVARGGFSLRPKKAFSLHLPSLWSGRFWGRHGCSFDSTGKGKCATGDCGGSLFCNGVGGAPPATLAEITLGNDQDFYDVSLVDGYNLAISITPVKGSGKCSYAGCVRDLNMICPVGLQVRSHVNEQVVACKSACSAFNSPRYCCTGRFGSPQSCKPTAYSRIFKAACPKAYSYAYDDPTSIATCTGGNYLVTFCPRHH 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 52754900 52755664 + Bda008709.1 Bda11g01787 16895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01787 254 Pfam Thaumatin family 39 251 IPR001938 -
Bda11g01787 254 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Bda11g01787 254 PRINTS Pathogenesis-related protein signature 82 93 IPR001938 -
Bda11g01787 254 PRINTS Pathogenesis-related protein signature 241 250 IPR001938 -
Bda11g01787 254 PRINTS Pathogenesis-related protein signature 95 124 IPR001938 -
Bda11g01787 254 PRINTS Pathogenesis-related protein signature 34 46 IPR001938 -
Bda11g01787 254 PANTHER THAUMATIN-LIKE PROTEIN 23 252 - -
Bda11g01787 254 SMART tha2 35 251 IPR001938 -
Bda11g01787 254 CDD TLP-PA 34 250 - -
Bda11g01787 254 PIRSF PR5 4 254 IPR001938 -
Bda11g01787 254 Gene3D Thaumatin 33 251 IPR037176 -
Bda11g01787 254 ProSiteProfiles Thaumatin family profile. 32 253 IPR001938 -
Bda11g01787 254 SUPERFAMILY Osmotin, thaumatin-like protein 33 252 IPR037176 -
Bda11g01787 254 PANTHER OS03G0233200 PROTEIN 23 252 IPR001938 -
Bda11g01787 254 ProSitePatterns Thaumatin family signature. 95 110 IPR017949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01787 - - - csv:101219392 439.113
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01300 Bda-Chr8:52670663 Bda11g01787 Bda-Chr11:52754900 2.47E-50 dispersed
Bda11g01787 Bda-Chr11:52754900 Bda11g01803 Bda-Chr11:53070708 2.71E-173 dispersed
Bda05g00962 Bda-Chr5:58088385 Bda11g01787 Bda-Chr11:52754900 2.21E-80 transposed
Bda11g01787 Bda-Chr11:52754900 Bda14g00939 Bda-Chr14:7500186 8.39E-155 wgd
Bda11g01787 Bda-Chr11:52754900 Bda06g00483 Bda-Chr6:6853712 8.71E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g213 Blo04g00849 Blo16g00113 . . . Bpe13g00376 . . Cmo13g01030 Cmo18g00053 . . . . . Cpe20g00148 . . . . . . . . . . . . . . . . . . . Lsi02g00229 Csa01g00710 Chy12g01400 Cme12g01834 . . Bda11g01787 . . . Bma03g00919 . Sed08g1361 . . Cma13g00995 Cma18g00070 Car13g00828 Car18g00061 Cpe09g01116 . Bhi08g01289 Tan05g2196 Cmetu04g1577 Lac10g0286 Hepe07g2357 . . Cla04g01051 Cam04g1094 Cec01g1609 Cco01g1655 Clacu04g1120 Cmu04g1104 Cre01g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001931 3 2 2 2 1 2 2 2 2 3 2 2 4 2 2 4 2 0 4 2 2 2 2 2 2 2 2 3 2 3 67