Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01789 ATGAGATCTTCTTCGCAGAGAATCAACATCGCTGCAAGAACTCAGAGGCTTGATGTTGATAACTGTATTTCTCTGCGTTATTACTGTAGAATTGCTGATAATATCCTCATGCAGGCTGACATCTTTCGAGCGGAGAGGAATCTAATAGATCTTTATGTAATGTTACTGAGATTTTCAAGTTTGGTCAGTGAGACGATACCATGCCATCAAAATTATGCCTCGTCTCCTCAAAGTCAAAAAACTTATTTGAAAAAGAGATTGATGATTACCTTGAGGGAGCTGGAAGAATTGAAGCCAGCAGTGCAACGAAGGGTTGACGAGTTAAATGCAAAACAAGTATCTCAAATAAATGGGTGGGATAATCACCAACAAAATAGTTCACTCGAATGGCCTTCTGTTAGTAGACAAAGTTCTGGCTGCAATGATATTGCTAAGACATCTGGACCAGTTGTGAGAGACATTTCACGTCGAGGTACCAGGTCGCAGCAGCTTTCATATTCAAAACCCGTGGAAGAACAATTCCGCAAATTGTCTCTTGCTATCCCGCGTCCAAAAGAGGAAACACTTTCTCGTCATTCTATTTTGGGCCCAAATGGGCTTCATGGTCAGTGGCAGCCACCGATTGTCAATAAAGGAGTTCAATATCCAAGTATTGCAGACTTAACTTCTGTTGACATTCCGAGTGTACAACATTATTTAGAAAACGAGCTTGTGATTGAAAAAGATCATGGCAACTCAGAAAACAAAGAATTAGATCTGGAGTCCCTTCCTACTCCAAATGAAGATAGTCAGACACATGATGTGGATAAACCTAGTTGCTTGATCTCCTTTGAAACAATGGAAAATTCTGAACCTAATGATATTATCCGACAGCCTTCTCCTCCTCCTGTACTCGCTGAAGTGCAGGATTTGATACCTGCAGTGTCATCCCAAGTTACTGAGGTAGAATGTGCAGTGGCGGCTCCCTCATCAGATGGTTTTGTTCACGTTGAAGCTTCCTTACAGTTGCATATTTCAACGAGCATGATGGATAATTTTTTGAGACTAGCAAAGTCAAATACGGATAAGAACTTAGAAACTTGTGGTGTTATTGCTGGTTTACTTAAAAACAAAATATTTTATGTGACCACTCTGATCATACCAAAGCAGGAATCAACATCAAATACTTGTCAGACCACAAATGAGGAGGAGATATTTGAATTGCAAGATAAACAATCCCTTTTCCCGCTTGGCTGGATTCATACACATCCATCTCAGTCATGCTTCATGTCATCTGTTGATCTTCACACGCATTATTCTTATCAGACACATCCATCTCAGTCATGCTTCATGTCATCTGTTGATCTTCACACGCATTATTCTTATCAGATTATGTTGCCAGAATCAGTTGCAATTGTGATGGCACCTAAAGATATCTCGAGAAAACATGGTATTTTTCGGTTGACTGCACCTGGCGGCATGTCGGTTATCAGGCAATGCCAGCAACGTGGGTTCCACCCACACAGTCAGCCTCCAGATGGTGGCCCCATCTACCAAACATGTACAGATGTCTACATGGACCCCACTCTAAGATTCGATGTTGTTGATCTTCGATAA 1596 41.17 MRSSSQRINIAARTQRLDVDNCISLRYYCRIADNILMQADIFRAERNLIDLYVMLLRFSSLVSETIPCHQNYASSPQSQKTYLKKRLMITLRELEELKPAVQRRVDELNAKQVSQINGWDNHQQNSSLEWPSVSRQSSGCNDIAKTSGPVVRDISRRGTRSQQLSYSKPVEEQFRKLSLAIPRPKEETLSRHSILGPNGLHGQWQPPIVNKGVQYPSIADLTSVDIPSVQHYLENELVIEKDHGNSENKELDLESLPTPNEDSQTHDVDKPSCLISFETMENSEPNDIIRQPSPPPVLAEVQDLIPAVSSQVTEVECAVAAPSSDGFVHVEASLQLHISTSMMDNFLRLAKSNTDKNLETCGVIAGLLKNKIFYVTTLIIPKQESTSNTCQTTNEEEIFELQDKQSLFPLGWIHTHPSQSCFMSSVDLHTHYSYQTHPSQSCFMSSVDLHTHYSYQIMLPESVAIVMAPKDISRKHGIFRLTAPGGMSVIRQCQQRGFHPHSQPPDGGPIYQTCTDVYMDPTLRFDVVDLR 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 52826062 52832623 + Bda008714.1 Bda11g01789 16897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01789 531 SUPERFAMILY JAB1/MPN domain 434 487 - -
Bda11g01789 531 SUPERFAMILY USP8 N-terminal domain-like 22 114 - -
Bda11g01789 531 Gene3D Cytidine Deaminase, domain 2 435 531 - -
Bda11g01789 531 PANTHER AMSH-LIKE PROTEASE 1 435 - -
Bda11g01789 531 Pfam USP8 dimerisation domain 10 103 IPR015063 -
Bda11g01789 531 CDD MPN_AMSH_like 335 531 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Bda11g01789 531 Gene3D - 1 129 - -
Bda11g01789 531 PANTHER AMSH-LIKE PROTEASE 435 531 - -
Bda11g01789 531 Coils Coil 91 111 - -
Bda11g01789 531 ProSiteProfiles MPN domain profile. 336 464 IPR037518 -
Bda11g01789 531 MobiDBLite consensus disorder prediction 121 144 - -
Bda11g01789 531 MobiDBLite consensus disorder prediction 121 149 - -
Bda11g01789 531 Gene3D Cytidine Deaminase, domain 2 327 434 - -
Bda11g01789 531 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 1 435 - -
Bda11g01789 531 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 435 531 - -
Bda11g01789 531 SMART pad1_6 335 484 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bda11g01789 531 MobiDBLite consensus disorder prediction 243 268 - -
Bda11g01789 531 SUPERFAMILY JAB1/MPN domain 335 435 - -
Bda11g01789 531 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 332 435 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01789 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - qsu:112032297 690.263
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00497 Bda11g01789 CCT
Bda06g00497 Bda11g01789 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01770 Bda-Chr11:52548520 Bda11g01789 Bda-Chr11:52826062 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g380 . Blo16g00146 Bda06g00497 . . Bpe13g00335 Bma06g00007 Bma12g00946 Cmo13g01089 . Cma10g00259 . Car10g00244 . Sed08g0327 Cpe20g00100 . Bhi02g00016 Tan09g1959 Cmetu02g0820 . Hepe09g0317 . . Cla06g01496 Cam06g1650 Cec06g1710 Cco06g1708 Clacu06g1616 Cmu06g1565 Cre06g2377 . . Cone13ag0007 Cone19ag0006 Lsi02g00156 Csa01g00640 Chy12g01462 Cme12g01902 . Blo15g00356 Bda11g01789 . Bpe07g00738 Bpe15g00552 Bma03g00880 . Sed14g0142 Cmo10g00277 . Cma13g01048 . Car13g00881 . . Cpe18g00736 Bhi08g01038 Tan05g2301 Cmetu08g1010 Lac10g0205 Hepe07g2422 . . Cla04g01118 Cam04g1171 Cec01g1682 Cco01g1730 Clacu04g1199 Cmu04g1178 Cre01g1476 Lsi06g01360 Csa01g00352 Chy02g02391 Cme02g01776
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005782 2 1 1 3 1 1 2 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01789 Bda_Chr11 FPKM 2.283816 1.173882 0.0 0.210725 0.104492 0.273253 0.0 15.998859 17.676985