Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01807 ATGGCGATTGTGACAGGGGATCGGTACCAGGAGAAGCTTGTGAAGTTTGTCGAAGAACGAGTCGGCCCTTTGATTGAAGGAAGTTTGGTGCTCAAGCTGAATCCAGCGGGCTTACACTATGTGCAATCGAGGTTGGAGGCCTTGCACGAGGTTGAAAGCCTCTTGGCTGGAGCTCCTATTGACTATCTCCGAGCTTATGTCTCCGACCTTGGTGATCACCGGGCGCTCGAGCAGCTACGTAGGATTTTGAGGCTACTTACGGTGCTGAAGGTTGTTTCTGTGCTTCCACCGCCGCAGAGGGACCCCACGCCGCTGTCTTTGTTGCCGTTTGGGAGGCTGAGGGTTTTGGAGCTTAGAGGATGTGATTTGTCTACTTCCGCGGCGAGAGGATTACTTGGGTTGAGGCATACCTTGGAGAAGATCACTTGCCACAATTCTACGGATGCTCTGCGGCATGTTTTTTCCAGTAGAATTGTTGAGATAAAGGACTCTTTAAAATGGAATCGATTATCATTTGTTTCGTGTGCTTGTAATGGCTTGGTTCTGATGGACGAGTCTTTGCAACTTCTTCCTGCTGTGGAAACTCTGGATTTAAGCAGAAACAAATTTTCAAAGGTGGATAATCTACGCAAGTGTTCCAAATTGAAGCACTTGGATCTTGGTTTTAATAATCTCCGTACAGTTGCCTCATTCAGCGAGGTCTCCTTACACATCTCTAAACTTGTTTTGAGGAATAATGCTCTAACTACTTTGCGTGGGATTGAGAATTTGAGGTCGCTTGAAGATCTTGATGTGTCCTACAATATTATATCCAATATCTCAGAAGTCGAAATCCTTGTTGGTCTTCCATCTCTTCAAAACTTGTGGTTGGAAGGAAATCCATTATGTTGCGCACGATGGTATCGCTCACATGTATTTAGCTGCTTCTTAGATCCCTATAAATTGAAGCTAGATGACCATGGAATTAGCAATAGAGAGTTTTGGAAGCGACAAATAGTTATTGCCAGCAAGCACAAGCGTCCTTCTAGTTTTGGTTTTTACTCTCCTGCCAATGATGATACTAGAAGAGAGGGTAGTATTATCAAGAATAAGATTAAGGTTTCTCGACTTGCTTCTATCGAGAGTGAAGAAGACAGCACATATGTATGCTCCGACCAAGAATCTGGGTCATGTGATAATGAGAGTCAAAGCAAAGAAGAGACAATTATATCAGAAAATGAGTTGGAAATAGCTGATTTGATAAATCGGATTGAAATTATGAAGAAAGAACGTTCTCATAATTGGTTGCATGAGTTTAAAGATTGGATGAATCATGAATCTGAGAATTTTGTTGATGGAAATGCTTACAATAGAACTAAATTGCAGTTTGGGAAAGAAAATTTAATAAGGAACAATCAAATAAAGAAACATCTTGGGGAAAGCTCACGGTATGCTACGGACTCTGTTCAAGAATCTGAAGATGAAAGCAGCATAAACTTATTAGAATCAGATAATTCGTTCATAGACTCATCTTTTGCTTTGCATTCATCACAACGCTCTGGTCAACGTGGTTTTGGCGGAATGCAGAAAGAAGATTTAAAAGGAGAGTTGAATTCTTTTTCAGATGCAAGGATTAATAATGCATCCAGGCATTCTAACAGCTCTCGTCATAGTTTCCTTGGAGGTCACCAGAATGGGATGGCTGAAAATGCTTACTATTCACCTTTGCGTGTTGCTAATTGTAGATCTGAGTCTCAGTCATCTTCAGCCTACCCTGGATCACCACCACAATATCGAGCAGACATTCTTCATCAACGCCAGATCTTAGTCGAAGAGATTTTGCAGCTATCTGCAGAGTCCTATTCCGTTGCTTCTTCTGACAGCAATACCAGCTGTAGTGAAGATGATGGCATTCCAGAAATCATTCCATCAATGCTCCAGGCTGATAAGTCTGTCGACGAGACCGAGGTGGATGGAGTTGAAAATCAGCCGTTGAGTAGTCATTATGAAAAGGGCAGTCTCCCAGGGCATGTATTTTCTTCTGTGAAGGAAAATGGTCAACTCGCGCCTGATTCTTTTGTGCGTAGTTGGCAGAAGCCAGTAGATGTGGACCACTACCGGGATGAACATATGAATGACTTCTCTCTCCCTTCTACTTCTCATGGGAATGAAATTGACCGTTCTCACAACCAAGAAGCTTGGAGGAAGAGGGAAAGCAAAAGAAAAGCAAAAAGAAGGGTAATTTCTATGTTGGAAAATGATGTAGTTGGCAGTACAGAAAGAATCACAAAAAACCAATTGTGGTTTAACTGA 2292 42.23 MAIVTGDRYQEKLVKFVEERVGPLIEGSLVLKLNPAGLHYVQSRLEALHEVESLLAGAPIDYLRAYVSDLGDHRALEQLRRILRLLTVLKVVSVLPPPQRDPTPLSLLPFGRLRVLELRGCDLSTSAARGLLGLRHTLEKITCHNSTDALRHVFSSRIVEIKDSLKWNRLSFVSCACNGLVLMDESLQLLPAVETLDLSRNKFSKVDNLRKCSKLKHLDLGFNNLRTVASFSEVSLHISKLVLRNNALTTLRGIENLRSLEDLDVSYNIISNISEVEILVGLPSLQNLWLEGNPLCCARWYRSHVFSCFLDPYKLKLDDHGISNREFWKRQIVIASKHKRPSSFGFYSPANDDTRREGSIIKNKIKVSRLASIESEEDSTYVCSDQESGSCDNESQSKEETIISENELEIADLINRIEIMKKERSHNWLHEFKDWMNHESENFVDGNAYNRTKLQFGKENLIRNNQIKKHLGESSRYATDSVQESEDESSINLLESDNSFIDSSFALHSSQRSGQRGFGGMQKEDLKGELNSFSDARINNASRHSNSSRHSFLGGHQNGMAENAYYSPLRVANCRSESQSSSAYPGSPPQYRADILHQRQILVEEILQLSAESYSVASSDSNTSCSEDDGIPEIIPSMLQADKSVDETEVDGVENQPLSSHYEKGSLPGHVFSSVKENGQLAPDSFVRSWQKPVDVDHYRDEHMNDFSLPSTSHGNEIDRSHNQEAWRKRESKRKAKRRVISMLENDVVGSTERITKNQLWFN 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53110413 53115100 + Bda008736.2 Bda11g01807 16915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01807 763 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 2 639 - -
Bda11g01807 763 Coils Coil 403 423 - -
Bda11g01807 763 ProSiteProfiles Leucine-rich repeat profile. 259 280 IPR001611 GO:0005515
Bda11g01807 763 SUPERFAMILY L domain-like 176 323 - -
Bda11g01807 763 Gene3D Ribonuclease Inhibitor 160 331 IPR032675 -
Bda11g01807 763 SMART LRR_sd22_2 257 278 - -
Bda11g01807 763 SMART LRR_sd22_2 190 211 - -
Bda11g01807 763 SMART LRR_sd22_2 212 233 - -
Bda11g01807 763 SMART LRR_sd22_2 235 256 - -
Bda11g01807 763 MobiDBLite consensus disorder prediction 707 733 - -
Bda11g01807 763 ProSiteProfiles Leucine-rich repeat profile. 192 213 IPR001611 GO:0005515
Bda11g01807 763 PANTHER NISCHARIN RELATED 2 639 - -
Bda11g01807 763 Pfam Leucine Rich repeats (2 copies) 193 229 IPR025875 -
Bda11g01807 763 ProSiteProfiles Leucine-rich repeat profile. 214 235 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01807 - - - zju:107418533 884.019
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01807 Bda-Chr11:53110413 Bda14g00722 Bda-Chr14:5466039 1.02E-06 dispersed
Bda11g01807 Bda-Chr11:53110413 Bda03g00490 Bda-Chr3:4196127 8.44E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g183 . . . . . Bpe13g00380 Bma06g00069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010273 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01807 Bda_Chr11 FPKM 8.11236 4.372349 9.198846 0.0 0.0 8.653747 8.854225 2.164451 4.374938