Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01810 ATGGGGAGTTTATTGCACTTATTCGATTTCAATCAGGGTAGCATGGACAAGAAATGTTTTACTCAAAAGAGACATTTTGGTGATCTGGATACCCCTAGAAATAGTATGAAGCTGCAGATAGATACTTCCCAGAGTTATTATGCAGTTGGAGAAGTCCAATACTCTTATCAAGTAGGAGTAGAGCATTCTGACCAGGATTTTTATCCAAATGAGGTTTCGATGAAGAAGTTAATTGACAAGGAAACGTCGAAACATTCAAATCCCAGAAAAAATGCACCAAACATTGTAGCTCGGCTGATGGGAATGGATATAATGCCATCAGATATGAAACCTGAAACGCAGTTGAGAGAGAAAACAAAGCAAGGTAATTTTGCAAACAAAGAAAGGATTCAAAGGTGCCCAGATGGTCCTATACTTTCCCACTTAGATTCTTCCATGCAAATGGGATCATCTTACCATAATTGGGAGAGAGAATCCAATCAATGGAGTAGAACCAATAAGATGGCAAACCCAAGACGTCGAGAACATCCTCAAGAAGAGGAGCTTCAGAAGTTCAAGAAAGAATTTGAAGCATATCAGGCAGCAAGGATTAGGGAATGTTCTAGGGTTCTTGAACTTGGTTGTAGTAACAAACAGTTACTTGCTCAGGAAGACCTTGCCAGGGTACAGATGGCGGTCACTGCAAACTCCAGGAGACTAGCGACTCAGAAACCTGTAAAACCAAAGAATTCCATGCTGGAAATAAGGTCGCTTGGTCAATCTGATTTGAAAGATCATGGTAATAAGATGGATTTTTCTCCAGTTGAAAACAAGAAATCATTTTCTATGAGAAACAAATCCAACCAGGTACATATTGACCGGTCCTTCTTGACAAGTTGTGATCAAAAAATGAAATCTTCATCTCCCTCAAGGATTGTTATCTTGAAGCCTGGTCCTGATAGGATATGCCACCTCAAAGAAAGTTGTGTTAGCTCTTCAGGGACTTTAGATGAAAGAACTAACATAGAGGATTTTCTCGAGGAGGTGAAGGAGCGATTGAAGTGGGAATTGCATGGAAAAACAACTCAAATAGTTTCTGGAGTTCGGGGTAGTGGAATTGAGACCCCGTATAGTGAAAAGCCATCTGTTCCAAAGCATATTGCTAGGTGTTTAGAAAAACATGCCAGAGAAGGTGTGAATAAAGAGATTGGAATAAATTTGATCCGATCCGAGTCAACAAGGTCATGTAGAAGTGACACTCAGTTGAATGGACCGAATTCTCCCGAGTTTGTAAACAGAAATACTAGGAGACTTTCGTCTGCGAGACTGCGAAATATTGAAAAGAAAGATGCAACTATGAACGATGGGAACCTTAGATTGGCTGTTTTAGATGATGAAAGTGTCGCAAAGGAAGTCGAAGATATAGTGAGAGGCGGGCAAGATTCGATCTATTTGGAAATTGAAAGAGATGAAGAAGAAGTGCAAACAAGATCTTTCAGGCATGGAGCAAGTGAAAATGAAGTGGTTCACAGAGAATTGTCCCCTAGGAACCTGACTAGGTCATTTTCAGCGCCAGTATCAGGGACTTCATTTGGGAAACTTCTTCTCGAGGATAGGAACATTTTAACTGGTGCTCAGATCCGGAGGAAGCATGAAGATAACGAAAATGTATCAGTGAAGATGAAAGTTCCAAAGAAAGAAAAATTTAATCTCAAAGAAAAAGTTTCGAATTTCAGATATAATTTCACTCTCAGAAGGAAACTGTTTGGTAGAAAGACACAGTCAATGGTGGAATCACTGAAGACAGAAGTCAGTCCTTTGAAGGACCTGATGAGTGGACCAACTGTTCTTTTGAACACTAGGGAGAGGCAGACAAGGGAGAACTCTACTGAGGTGCCCCCCAGTCCTGCTTCAGTGTGCAGCAGTACTGCAGATGAACTCTGGGGTCCCACTGATCATCTCAGCCCAATTTCAACATCAGATGTTACTCCGGGAGATGATATTGCTGTGCCTCAAGTTTTTCGCAAGATAAGCTCTAATTTAAATGAGCTACGGAGGCAGCTGCATAATCTCGAGTCTGATGAGTTTCAAAGTACAGCTGAACCGCAGCCTGACGAGTCTGAACTTGTCGACCTAGAGGATCATGAAGAAGCGTACGTCAAACAACTTCTCGTTGCTTCTGGTTTATACGATGGGTTAGCAGAAAAATGCTCATCTCGATGGGACATGCTTTCGAACCCTATTAGTAACTCAGTCTTTGAAGAAGTAGAAGAAACTTACAGAAAATTGGTCAAAGAGAATAAAAATAATTTGAAGGACAAGAATGGGAAGGTAGATCATAGATTGTTACTTGATCTATTGAATGAAGCCCTTTCAACTATTCTTGTACCCTCTTCAAAAATCTCAAGTTTGAGAGGATTCAATAATCCGTCGAGAATGGTGCCATTTTTCGGGCAGAAACTAATGGATTTGGCATGGGATGTCATTCGTGCATATATATACCCTCCGACTAACTGGTCATCTTATTACTCCCTCGACAGCATGGTTGGCCGGGATGTAAATTCAATTCATTGGCCTGCGTTGATGAATGATGAGTCGTATATCACAGGAAGAGATATCGAAAGTTTAATCACACGGGATCTAGTCAAGGAAATTGTTAATGACATCCAGGTATAA 2655 40.79 MGSLLHLFDFNQGSMDKKCFTQKRHFGDLDTPRNSMKLQIDTSQSYYAVGEVQYSYQVGVEHSDQDFYPNEVSMKKLIDKETSKHSNPRKNAPNIVARLMGMDIMPSDMKPETQLREKTKQGNFANKERIQRCPDGPILSHLDSSMQMGSSYHNWERESNQWSRTNKMANPRRREHPQEEELQKFKKEFEAYQAARIRECSRVLELGCSNKQLLAQEDLARVQMAVTANSRRLATQKPVKPKNSMLEIRSLGQSDLKDHGNKMDFSPVENKKSFSMRNKSNQVHIDRSFLTSCDQKMKSSSPSRIVILKPGPDRICHLKESCVSSSGTLDERTNIEDFLEEVKERLKWELHGKTTQIVSGVRGSGIETPYSEKPSVPKHIARCLEKHAREGVNKEIGINLIRSESTRSCRSDTQLNGPNSPEFVNRNTRRLSSARLRNIEKKDATMNDGNLRLAVLDDESVAKEVEDIVRGGQDSIYLEIERDEEEVQTRSFRHGASENEVVHRELSPRNLTRSFSAPVSGTSFGKLLLEDRNILTGAQIRRKHEDNENVSVKMKVPKKEKFNLKEKVSNFRYNFTLRRKLFGRKTQSMVESLKTEVSPLKDLMSGPTVLLNTRERQTRENSTEVPPSPASVCSSTADELWGPTDHLSPISTSDVTPGDDIAVPQVFRKISSNLNELRRQLHNLESDEFQSTAEPQPDESELVDLEDHEEAYVKQLLVASGLYDGLAEKCSSRWDMLSNPISNSVFEEVEETYRKLVKENKNNLKDKNGKVDHRLLLDLLNEALSTILVPSSKISSLRGFNNPSRMVPFFGQKLMDLAWDVIRAYIYPPTNWSSYYSLDSMVGRDVNSIHWPALMNDESYITGRDIESLITRDLVKEIVNDIQV 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53260196 53264622 + Bda008739.1 Bda11g01810 16918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01810 884 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 883 - -
Bda11g01810 884 Pfam Domain of unknown function (DUF4378) 710 877 IPR025486 -
Bda11g01810 884 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 883 - -
Bda11g01810 884 Coils Coil 667 694 - -
Bda11g01810 884 Pfam DUF761-associated sequence motif 92 107 IPR032795 -
Bda11g01810 884 MobiDBLite consensus disorder prediction 615 637 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01810 - - - qsu:112005480 898.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01810 Bda-Chr11:53260196 Bda14g00949 Bda-Chr14:7624490 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1198 Blo04g00861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0900 Cone12ag0871 . . . . . . . . Bda11g01810 . . . Bma03g00929 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008231 2 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01810 Bda_Chr11 FPKM 33.917294 34.634933 16.907629 16.718292 15.71146 16.695454 15.23769 33.307472 33.081505