Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01811 ATGAAGTGGGAAAACCCAGAAGAATTTCATCCCCGCCCTTATCGGCCACTGCGAGAAGACGGTTCACAGATGGAGGAACCTCAAAATGGCAATGGGGACGGTGGGGTTTTGTACTTGAAGGTGATGACTGACGAGCAATTGGAGACACTTCGCAAGCAAATCGCTGTTTACGCTTCCATTTGCGAGCAGCTCGTGGAGATGCATAAAACCCTTACGTCCCAGCAGGATCCTTCAGCCACTGTTGTAATTTATTGCTCTCTTATTTTATTTCCAGGAATCAGGCTTGGTAGTTTATATTGTGAGCCATTAATGGCTTCCTCTGGCCCCAAAATCACTTCAAGACAGCGATGGAATCCAACCCCTGTTCAGCTTCAGATTCTTGAGCGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGCAGAAAATAAAAGAGATAACATCCGAATTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTACAATTGGTTCCAGAACAGGCGAGCTCGATCAAAGAGGAAACAACAAACTTCAGCCCCAGGTAATGCTGAATCAGAAGCTGAGACTGAAAACGAGTCGCCTAATGAAAACGAGACGGGACGAATGGATTTTCAAACCAAACAGAACAACTCCACATCCATGGCTGATGATCTGAGATTCCAGATCACTGAGAGCGGCTCTGCTTTTCCTTTTTTAGATGGAAGAAGCAACAAAGCAGAGATTTTATTTCCCTCCAATGGAACCATGGAAAATGGGAGAAATTTGGGTCAAATGTCGTTTTACGAGGGTATGTTCAAGTGA 804 44.53 MKWENPEEFHPRPYRPLREDGSQMEEPQNGNGDGGVLYLKVMTDEQLETLRKQIAVYASICEQLVEMHKTLTSQQDPSATVVIYCSLILFPGIRLGSLYCEPLMASSGPKITSRQRWNPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQQTSAPGNAESEAETENESPNENETGRMDFQTKQNNSTSMADDLRFQITESGSAFPFLDGRSNKAEILFPSNGTMENGRNLGQMSFYEGMFK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53266261 53267384 + Bda008740.1 Bda11g01811 16919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01811 267 ProSiteProfiles 'Homeobox' domain profile. 110 175 IPR001356 GO:0003677
Bda11g01811 267 SMART HOX_1 112 179 IPR001356 GO:0003677
Bda11g01811 267 Pfam Homeodomain 114 174 IPR001356 GO:0003677
Bda11g01811 267 CDD homeodomain 114 176 IPR001356 GO:0003677
Bda11g01811 267 PANTHER - 21 266 - -
Bda11g01811 267 MobiDBLite consensus disorder prediction 168 204 - -
Bda11g01811 267 MobiDBLite consensus disorder prediction 1 22 - -
Bda11g01811 267 MobiDBLite consensus disorder prediction 1 33 - -
Bda11g01811 267 PANTHER WUSCHEL-RELATED HOMEOBOX 13 21 266 IPR044559 GO:0003700
Bda11g01811 267 SUPERFAMILY Homeodomain-like 112 177 IPR009057 -
Bda11g01811 267 Gene3D - 116 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01811 - - - qsu:112005537 311.997
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00324 Bda-Chr3:2762501 Bda11g01811 Bda-Chr11:53266261 1.23E-74 dispersed
Bda11g00976 Bda-Chr11:9505207 Bda11g01811 Bda-Chr11:53266261 4.66E-87 dispersed
Bda11g01811 Bda-Chr11:53266261 Bda15g00511 Bda-Chr15:8179700 5.01E-14 dispersed
Bda11g01802 Bda-Chr11:53062380 Bda11g01811 Bda-Chr11:53266261 1.93E-15 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00976 CCT 1 216 Wox Gene Family AT4G35550 54.5 2.0e-59 226.1
Bda11g01811 . 1 176 Wox Gene Family AT4G35550 61.9 1.7e-53 206.5
Bda03g00324 CCT 30 178 Wox Gene Family AT4G35550 67.8 2.9e-53 205.7
Bda11g00976 CCT 32 170 Wox Gene Family AT1G20700 57.2 8.8e-39 157.1
Bda08g01367 BCT,CCT,ECH 71 217 Wox Gene Family AT1G46480 66.0 1.4e-49 193.0
Bda01g01609 . 1 146 Wox Gene Family AT1G46480 64.6 3.3e-48 188.3
Bda08g01367 BCT,CCT,ECH 71 217 Wox Gene Family AT1G46480 66.0 1.4e-49 193.0
Bda01g01609 . 1 146 Wox Gene Family AT1G46480 64.6 3.3e-48 188.3
Bda11g00976 CCT 1 216 Wox Gene Family AT4G35550 54.5 2.0e-59 226.1
Bda11g01811 . 1 176 Wox Gene Family AT4G35550 61.9 1.7e-53 206.5
Bda03g00324 CCT 30 178 Wox Gene Family AT4G35550 67.8 2.9e-53 205.7
Bda11g00976 CCT 32 170 Wox Gene Family AT1G20700 57.2 8.8e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16733 PF00046 Homeodomain 1.70E-18 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01811 Bda_Chr11 FPKM 17.558447 18.499453 15.936489 15.129302 23.632305 21.743601 23.75897 15.000519 14.848366