Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01813 ATGGCAATTACTGTTATCGGTAACTCTGGTCTGTTATCTCGCCTCAGAAATCTAATTAAGCTTCAGAGATTGAAGCACTCTATGGCGGAAGGTGGAGGGCAAGCTCAGTTATATCAAGAAATGGATTATAATTCTGAGGCACGAAGAGGTATTTCCCACATTGACACTTCAAAATGGAAAAAAGTAGATGCTAGAATCTTTGGGATACATCGTGGGATGATTTCGTCTCCGACTTTGACTGTCTTAAGAGTTCTTCGTGATAAAGGCTTTGAAGTCTACTTGGTTGGAGGATGTGTTCGTGACTTAATCCTGCATAAAGTACCCAAAGACTTTGACGTGATCACTTCGGCAGGACTGAAACAGATCGAGAAGCTATTTCATCGAGCACAAACTGTTGGACGGCGTTTTCCTATTTGTATGGTGCATATTAAAGATTCTGTTGTTGAGGTTTCAAGTTTTCAAACAGTGGCAAAATTGAAAAATTCAAAAGAGAAAGATATTGTTGCACATCCTCGAATGACGAGAGGCTGCAATGAAAGAGACTTGAAGCTCTGGAGTAACTCCATGTGCCGGGACTTCACAATTAACAGTTTATTCTTTGATCCTTTGATCAACATCATCTATGATTATGCTGACGGAATGGCTGACATAAAGGCTTTAAAGCTAAGGACTATAATTCCTGCTCCATTGTCATTTGAAGAGGATTGTGCAAGAATGCTAAGGGGCATAAGAATTGCGGCTCGTTTGGGGTTGTCATTTGCAAGCCACACTGAAAAGACCATGCATAAACTTTCTTTTTCCATTAAGAGTTTGTCCAAGGCCAGGTTAATGATGGAATTGAACTATATGTTGTCTTATGGAGCTGCAGAGTCCTCTATCTGTTTGCTTCAGAGATTCAACATCCTTGAAATACTCCTACCACATCATGCAGCTTACCTCAATCAACAGGCTCTGAGGAAACCTCACAATTCAATTATGTTGCTGAAATTGTTCTTCAATTTGGATAAAGTTGTTTCGTGTGATCGACCTTCGGACTGCAATATGTGGTTGGGACTGTTGGCTTTTCATCTGGCATTAGTAAACAACCCTCAAGATGCTCTTTATGTTCGGGCTTTTGCTGCTGTACTCTATCACGGGACGTGGGAAGAAGGTGTAAAATTTGCAAGAGAAAATCCTCGAGTGGAAGTTAACTTTGATCCTGAAATTACAACATCCTCTCACTTTAAATCTGATGAAGATCTTGCTAAAGGGATTCTAAAGATTGCTTCTTTAGTTCAAGATTTTATTTTTGCTTTTTCTGAGACAGATTCTTCTGAGTCGTTAACCGGTCATCCTTTTTTGGTATTTTTATCAAAAAAAGCAGCTAAAAATGTGGCAGAAATTTTCAGAGTGCTACTGGTTGATGTTGAATTGTACAAGTCGGGAAGAAAGAGTTTTGCAATTGACTACCATTTGTTAGGTAAGGGCGACCTTTCGGAGGCCAGATTTGTTATGGGAAAAGTCATCTTGGAGACTATTTGCGGTGGAATTGTTCAGCAGGAGCCAGAGGTCCTTTTGGAGAATTATGGCTGGAGAGATGGGGAAGTTACAAATATGGCACTTTCTGATTCTATGATCCATCAAATGGGGGAGAAACATTATGGAAAAAGGGCCCCATCGCCTCATGCACTAAATGAAAAAATGGTTAAGAAACAGAAGAAGGACAATCATCATAGGCAGGAAATTGCTAGAAAGAGTGAAACTATTGTTCAAAACTGGAAGTATGGCAACAGAGTAGAAGAGGGAGAGAGAAAAATACTGAAATACAGGGGCCGCGCCGAAGAAGCAGAGAGCACTAAGAAGAAGCAAGACACTCTTGAAAATGAGAGAATCTGTGTTAAATCTAAGAGTGAAAGGATGCACCGAGTATTGCCGAGAAAAATTACGAAGAAGCAGCTAGAAGCAGGAAAGAGTAGTATTAGCCAGGTGGAGGAAGGAAAAGAGCAGCAGGCTGTGTTGGAGAAGAAAAGGGATGCCAATGGTGAATTAGGAAAGCACAAGCAAACCAAGCCCCTATCCAGCCTCTTTAAATGA 2073 40.62 MAITVIGNSGLLSRLRNLIKLQRLKHSMAEGGGQAQLYQEMDYNSEARRGISHIDTSKWKKVDARIFGIHRGMISSPTLTVLRVLRDKGFEVYLVGGCVRDLILHKVPKDFDVITSAGLKQIEKLFHRAQTVGRRFPICMVHIKDSVVEVSSFQTVAKLKNSKEKDIVAHPRMTRGCNERDLKLWSNSMCRDFTINSLFFDPLINIIYDYADGMADIKALKLRTIIPAPLSFEEDCARMLRGIRIAARLGLSFASHTEKTMHKLSFSIKSLSKARLMMELNYMLSYGAAESSICLLQRFNILEILLPHHAAYLNQQALRKPHNSIMLLKLFFNLDKVVSCDRPSDCNMWLGLLAFHLALVNNPQDALYVRAFAAVLYHGTWEEGVKFARENPRVEVNFDPEITTSSHFKSDEDLAKGILKIASLVQDFIFAFSETDSSESLTGHPFLVFLSKKAAKNVAEIFRVLLVDVELYKSGRKSFAIDYHLLGKGDLSEARFVMGKVILETICGGIVQQEPEVLLENYGWRDGEVTNMALSDSMIHQMGEKHYGKRAPSPHALNEKMVKKQKKDNHHRQEIARKSETIVQNWKYGNRVEEGERKILKYRGRAEEAESTKKKQDTLENERICVKSKSERMHRVLPRKITKKQLEAGKSSISQVEEGKEQQAVLEKKRDANGELGKHKQTKPLSSLFK 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53291384 53298600 + Bda008743.2 Bda11g01813 16921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01813 690 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 1 690 - -
Bda11g01813 690 MobiDBLite consensus disorder prediction 661 678 - -
Bda11g01813 690 MobiDBLite consensus disorder prediction 641 690 - -
Bda11g01813 690 Coils Coil 592 612 - -
Bda11g01813 690 CDD NT_ClassII-CCAase 79 219 IPR002646 GO:0003723|GO:0006396|GO:0016779
Bda11g01813 690 SUPERFAMILY Poly A polymerase C-terminal region-like 221 358 - -
Bda11g01813 690 Gene3D - 224 391 - -
Bda11g01813 690 Gene3D Beta Polymerase, domain 2 74 223 IPR043519 -
Bda11g01813 690 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 1 690 - -
Bda11g01813 690 SUPERFAMILY Nucleotidyltransferase 67 218 IPR043519 -
Bda11g01813 690 Pfam Probable RNA and SrmB- binding site of polymerase A 250 312 IPR032828 -
Bda11g01813 690 Pfam Poly A polymerase head domain 92 223 IPR002646 GO:0003723|GO:0006396|GO:0016779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01813 - - - jre:109014131 642.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01813 Bda-Chr11:53291384 Bda13g00519 Bda-Chr13:6264119 5.03E-115 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01813 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01064 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01813 Bda_Chr11 FPKM 97.103638 104.33213 72.641724 68.584961 45.535778 51.058102 48.425655 42.584984 45.173252