Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01815 ATGGAAGGTCTTCTTCAGTGCCCTGCAAATTTCATTCCTCTTTCGCCAATCGGTTTCTTGAAGCGTGCTGCAGTGATTTATGGCGACAGAGTTTCGATTATTTACGACACTAAGAAATTCTCATGGAGTCAAACCTACCATAGATGTCTTAAGCTCTCTTCAGCTCTGGTTCTTCGATTGGAGATCTCTCCGGGTGACATTGTTGCAGCTTTTGCGCCAAACATTCCAGCACTCTACGAGCTTCACTTTGCAGTTCCTATGGTGGGAGCAGTCATTTCCGCTCTGAACATTCAGTTGGATCCGTCTACATTAGCGTCGATTTTACAACAATTAGAGCCCAAAGTTATTTTCGTGGACTACCAATTTCTTGATGTTGTCCTTAAGACACTAAACATACTCTCCATTCAGAACACCGAAAAGCTACCCCGCCTGGTTATTATACCAGAGATGAATCAAACATCGCTTTCGACAATCGACCAAACAATACCAAACATCCTCGATTATGATGAGCTTCTTTCAACGGGAGATCCAGGCTTTACACCTTTGCCAAACAAGGAGTGCAGTCCGATTTCGGTGAATTACACTTCTGGCTCGACTGGGAAACACAAAGGAGTAGTTTACAGCCACAGAGCTACCTATCTGAATTCGATAGCAACCATCTCCCGAATCAATATGCAGACAACGCCTGTGTTTTTGTGGACGGTAGACATGTTTAGGTGCAATGGGTGGTGCTTCGTTTGGGCAATGGCTGCTATTGGAGGGACAAACATCTGCCTCAGAAAAGTGTCAGCAGAAGTCATATTTGACGCTGTACTTCTTCACAAGGTCACTCTCTTCTGTGGAGCACCCGCAATTTTGAAACTGATTGCAGAGGCACCTTCAAGCATTCGAAGGCCACTTCCATGGATGGTTAGTCTTATAATTGCAGGCGCATTTCCAGTCCCAGATGTTCTAATTAAGGTGATAGAGCTAGGATTCAACGTCAGCCATGGTTACGGCATGACTGAAGCCCTCGGACCAGCCATTATCAGACCTTGGAAGCCTGAATCCAAAGCTATAGGATTCGAAGTAACAAAACGAAAATGCGGAGAAGCGCTTCACAGTCTGGCAATAGAGGTCGACGTGAAAGAGCCGAAAAGCATGAAAAGCGTACCAAACGACGGGAAAACGTTAGGGGAAATAATGTTCAGGGGAAACACATTAATGTCAGGGTACCTCAAAAACCCTAAAGCAACACGAGAAGCTTTCGAAGGAGAATGGTTCAGAACAGGGGACCTTGCCGTCCGACATCCAAACGGTAGTTTACAAATGAAAGACAGGGCAAAAGACATAATAATCAGCGGCGAAGAGATGATAAGCTCGGTGGAAATAGAGGCGGTGTTGTTGAGCCATCCTAAGGTGTTGGAGGCTGCCGTGGTCGGAAAACAGGAGGATAGTTCGCCGGACACGCCCTGCGCTTTTGTGAAGATGAAGCAGGAATGCAGCGCGACGGCGACGGAGATTGTAGAGTTTTGCGGACGGTATCTGCCTCCATATATGCTCCCACGCAGCGTCGTTTTCGGAGATCTGCCGCAGAACGCTAATGGCAAAGTGCAGAAATTTGTGCTGAGAGAGAAGGTCAAATCAGTTGGTTTCCAGTTCTTCCATGGCAGAGCGATTTCTACTGCACTAACTCCTCAGCAGCTTCTAATATAA 1695 46.43 MEGLLQCPANFIPLSPIGFLKRAAVIYGDRVSIIYDTKKFSWSQTYHRCLKLSSALVLRLEISPGDIVAAFAPNIPALYELHFAVPMVGAVISALNIQLDPSTLASILQQLEPKVIFVDYQFLDVVLKTLNILSIQNTEKLPRLVIIPEMNQTSLSTIDQTIPNILDYDELLSTGDPGFTPLPNKECSPISVNYTSGSTGKHKGVVYSHRATYLNSIATISRINMQTTPVFLWTVDMFRCNGWCFVWAMAAIGGTNICLRKVSAEVIFDAVLLHKVTLFCGAPAILKLIAEAPSSIRRPLPWMVSLIIAGAFPVPDVLIKVIELGFNVSHGYGMTEALGPAIIRPWKPESKAIGFEVTKRKCGEALHSLAIEVDVKEPKSMKSVPNDGKTLGEIMFRGNTLMSGYLKNPKATREAFEGEWFRTGDLAVRHPNGSLQMKDRAKDIIISGEEMISSVEIEAVLLSHPKVLEAAVVGKQEDSSPDTPCAFVKMKQECSATATEIVEFCGRYLPPYMLPRSVVFGDLPQNANGKVQKFVLREKVKSVGFQFFHGRAISTALTPQQLLI 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53305467 53307698 - Bda008745.1 Bda11g01815 16923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01815 564 Gene3D - 8 441 IPR042099 -
Bda11g01815 564 Pfam AMP-binding enzyme C-terminal domain 456 530 IPR025110 -
Bda11g01815 564 PANTHER ACYL-ACTIVATING ENZYME 22 542 - -
Bda11g01815 564 PANTHER FATTY ACYL-COA SYNTHETASE FAMILY PROTEIN 22 542 - -
Bda11g01815 564 SUPERFAMILY Acetyl-CoA synthetase-like 11 543 - -
Bda11g01815 564 Gene3D - 442 544 IPR045851 -
Bda11g01815 564 Pfam AMP-binding enzyme 21 447 IPR000873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01815 - - - pop:18101069 682.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01815 Bda-Chr11:53305467 Bda12g00283 Bda-Chr12:3063508 4.60E-165 dispersed
Bda11g01815 Bda-Chr11:53305467 Bda03g00316 Bda-Chr3:2720148 1.32E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1174 . Blo16g00101 . . . Bpe13g00393 . . . . . Cma07g00390 . Car07g00343 . Cpe19g00892 . . . . . . . . Cla01g02030 Cam01g2136 Cec04g1793 Cco04g1859 Clacu01g2152 Cmu01g2028 Cre04g1703 . . . . Lsi01g00540 . . Cme08g00987 . . Bda11g01815 . . . . Bma06g00079 . . Cmo07g00384 . . . . . . . . . . . . . . . . . . . . . Csa06g03391 Chy02g00514 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011012 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01815 Bda_Chr11 FPKM 0.410697 0.0 0.264175 0.0 0.0 0.0 0.0 0.0 0.0