Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda11g01819 | ATGGATTTTACTTTGTATTCGTCTCGGTCTTCCTCGTCGTCGTCTTCTCCGTTTGCTAATTTCGTCGAGAGAGTCAGGGAAACCTGCTGCTACGCGGTTACCGCCATTATTGGGAATATTTTCTTGGCGATCTTCACATTTCCTTCCTCCGCCATTATTGGGAATATTTTCTTGGCGATCTTCACATTTTCCTTCGCGCTAGTGGGTACCCTGTTAGGAGCAATGACCGGAGCATTGATTGGGCAGGAGACAGAGAGTGGATTCGTCAGAGGTGCGTCCATCGGAGCAATCTCCGGCGCTGTTTTCTCCATTGAAGTCTTTGAATCTTCTCTCGTTCTTTGGAAGTCTGATGAATCTGGCATAGTCTGTCTTCTCTACCTGATTGATGTCATTTCAAGCCTCATAAGCGGGAGACTCGTTCGAGAGCGTATCGGTCCGGCGATATTCAGCGCGGTTCAAAGTCAGATTGGTGTCGGAGAGCTGAGTTTCGAGGACTTGCCTAACATATTCGACACGAGCAGCACTAAAGGGCTGGCCGGAGACTCCGTCGAGAAAATTCCGAAGATCACAATTTCAGAGAACAATGACTTGGATGCTTCTGGATATAAAGTTTCTTGCTCAGTTTGCCTCCAGGATTTCCAAGTAGGAGAGACGGTGAGAAGTTTACCTCAATGCCATCACATGTTTCACTTACCCTGCATAGACAAATGGCTTCTCAAACACGGTTCTTGCCCATTATGCAGAAGGGATCTC | 753 | 47.41 | MDFTLYSSRSSSSSSSPFANFVERVRETCCYAVTAIIGNIFLAIFTFPSSAIIGNIFLAIFTFSFALVGTLLGAMTGALIGQETESGFVRGASIGAISGAVFSIEVFESSLVLWKSDESGIVCLLYLIDVISSLISGRLVRERIGPAIFSAVQSQIGVGELSFEDLPNIFDTSSTKGLAGDSVEKIPKITISENNDLDASGYKVSCSVCLQDFQVGETVRSLPQCHHMFHLPCIDKWLLKHGSCPLCRRDL | 251 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 53376368 | 53378138 | + | Bda033167 | Bda11g01819 | 16927 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda11g01819 | 251 | Pfam | Ring finger domain | 205 | 248 | IPR001841 | - | |
| Bda11g01819 | 251 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 51 | 251 | IPR044523 | - | |
| Bda11g01819 | 251 | CDD | RING-H2_PA-TM-RING | 206 | 248 | - | - | |
| Bda11g01819 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 251 | IPR013083 | - | |
| Bda11g01819 | 251 | SMART | ring_2 | 206 | 247 | IPR001841 | - | |
| Bda11g01819 | 251 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 51 | 251 | - | - | |
| Bda11g01819 | 251 | SUPERFAMILY | RING/U-box | 205 | 251 | - | - | |
| Bda11g01819 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 206 | 248 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda07g00364 | Bda-Chr7:4643936 | Bda11g01819 | Bda-Chr11:53376368 | 4.46E-28 | dispersed | |
| Bda11g01819 | Bda-Chr11:53376368 | Bda14g00977 | Bda-Chr14:7903613 | 1.13E-142 | dispersed | |
| Bda14g00139 | Bda-Chr14:967873 | Bda11g01819 | Bda-Chr11:53376368 | 8.98E-13 | dispersed | |
| Bda11g01819 | Bda-Chr11:53376368 | Bda11g00985 | Bda-Chr11:9555561 | 1.57E-17 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda11g01819 | - | - | csv:101220376 | 369.777 |