Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01828 ATGAGCGCTTCGAGGTTCATAAAATGCGTCACGGTTGGGGATGGAGCTGTGGGCAAAACTTGTCTTCTTATCTCCTACACTAGTAACACCTTCCCAACGGATTATGTGCCAACTGTTTTTGACAATTTTAGTGCGAATGTTGTTGTCAATGGGAGTACTGTCAACCTGGGGTTGTGGGATACTGCTGGACAGGAAGATTATAATAGGTTAAGGCCGCTGAGTTATCGTGGGGCAGATGTTTTCATTTTGGCATTTTCGCTCATTAGCAAAGCCAGCTACGAAAATGTTTCCAAAAAGTGGATTCCAGAGTTGAAGCACTATGCACCTGGTGTTCCTATAGTTCTTGTTGGAACGAAGCTTGTTTTGCATTCGAATGATATATCATGGCTTTCTTACTATTTGGATTCTAATAATAATATTTATACTTTATTTGGAAGAAGGCTGTTAGTTATTTTTATTTCTGATGGGATAGATCTTCGCGACGATAAGCAGTTCTTCGTAGATCACCCTGGTTCTGTGCCAATTTCAACAGCTCAGAGGTGTTTTTCCTTTTTTCTTTTATTTCCTTATATTAATTTCAAAGATATTTCCACTATCAAGGGCGAGGAGCTAAGAAAGCTGATTGGTGCACCTGCTTACATAGAGTGCAGTTCAAAAACGCAGCTGAATGTGAAGGGAGTTTTTGATGCAGCAATTAGGGTTGTACTTCAACCACCAAAGCAGAAAAAAAAGAAGAACAAAGCTCAGAAAGCCTGCTCCATATTGTGA 768 40.1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLVLHSNDISWLSYYLDSNNNIYTLFGRRLLVIFISDGIDLRDDKQFFVDHPGSVPISTAQRCFSFFLLFPYINFKDISTIKGEELRKLIGAPAYIECSSKTQLNVKGVFDAAIRVVLQPPKQKKKKNKAQKACSIL 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53522876 53525072 - Bda008764.1 Bda11g01828 16936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01828 255 ProSiteProfiles small GTPase Rho family profile. 1 235 - -
Bda11g01828 255 PANTHER RHO FAMILY GTPASE 195 255 IPR003578 GO:0005525|GO:0007264
Bda11g01828 255 Gene3D - 5 250 IPR027417 -
Bda11g01828 255 ProSiteProfiles small GTPase Ras family profile. 2 255 IPR001806 GO:0003924|GO:0005525
Bda11g01828 255 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC11 149 179 - -
Bda11g01828 255 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC11 195 255 - -
Bda11g01828 255 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC11 1 126 - -
Bda11g01828 255 PRINTS Transforming protein P21 ras signature 7 28 - -
Bda11g01828 255 PRINTS Transforming protein P21 ras signature 109 122 - -
Bda11g01828 255 PRINTS Transforming protein P21 ras signature 47 69 - -
Bda11g01828 255 PRINTS Transforming protein P21 ras signature 30 46 - -
Bda11g01828 255 CDD Rop_like 6 236 - -
Bda11g01828 255 Pfam Ras family 8 236 IPR001806 GO:0003924|GO:0005525
Bda11g01828 255 SMART ras_sub_4 4 238 - -
Bda11g01828 255 ProSiteProfiles small GTPase Rab1 family profile. 2 255 - -
Bda11g01828 255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 236 IPR027417 -
Bda11g01828 255 SMART rho_sub_3 9 238 IPR001806 GO:0003924|GO:0005525
Bda11g01828 255 TIGRFAM small_GTP: small GTP-binding protein domain 7 120 IPR005225 GO:0005525
Bda11g01828 255 PANTHER RHO FAMILY GTPASE 149 179 IPR003578 GO:0005525|GO:0007264
Bda11g01828 255 PANTHER RHO FAMILY GTPASE 1 126 IPR003578 GO:0005525|GO:0007264
Bda11g01828 255 SMART rab_sub_5 7 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01828 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101218715 341.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01828 Bda-Chr11:53522876 Bda08g00609 Bda-Chr8:6198772 3.77E-19 dispersed
Bda13g00473 Bda-Chr13:5657206 Bda11g01828 Bda-Chr11:53522876 1.00E-90 transposed
Bda01g00475 Bda-Chr1:31828017 Bda11g01828 Bda-Chr11:53522876 1.46E-111 wgd
Bda11g01828 Bda-Chr11:53522876 Bda14g00964 Bda-Chr14:7764966 5.34E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1156 Blo04g00979 Blo16g00089 . . Bpe15g00483 Bpe13g00407 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0862 Cone12ag0826 . . . . . . . . Bda11g01828 . . . . Bma06g00090 Sed01g0196 . . . . . . . . Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . . . . . . . . Lsi07g01090 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01828 Bda_Chr11 FPKM 1.935728 2.939151 15.465847 16.751375 161.1427 143.611725 168.644608 4.307818 5.074743