Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01834 ATGGGGGAAGGGAGATTGACTGGTGTGGTACAGTGGTTCAATGACGCCAAGGGATTTGGTTTCATCAAGCCCGATGGGGACGGTCCAGATCTGTTTGTTCATCAATCGTCGATCCAATCTGATGGCTACCGACGTCTTGTCGAGGGCGAGCAAGTTGAGTTCCAGATCGCTCCTGGCGATGATGGAAAATCTAAAGCTGTAGATGTTATCGGTATTGATGGATCTTCGTTCCAAGGGAACAGGAGGGATGGTTCAGGTGGTGGAAGAGGTGGTCGTGGCGGTGGGTATGGTTTTGGCGGTGGCAACGGTGGGAGTGGTGGAGGAGGAGGTGGTGGGGCGGGTTCTTGCTATAATTGCGGTGGCTTTGGACACATGGCGAGGGATTGCATTAAGGGAAGCAGTGGAGGTGGAGGTGGAGGTGGAGGAGCTTGCTTTAAGTGTGGGGAGTACGGACACTTGGCTAGGGATTGCGCCAGTGGAAGCAGCAATTTTGGCAGAGGTGGAAGATTTGGTGGAAGTGGTGGTGCAGGCGGTGGCAGCACCTGCTTCAATTGTGGGAAGGCGGGGCACTTTGCAAGAGAATGTCCTGAAGCAAATTAA 600 53.67 MGEGRLTGVVQWFNDAKGFGFIKPDGDGPDLFVHQSSIQSDGYRRLVEGEQVEFQIAPGDDGKSKAVDVIGIDGSSFQGNRRDGSGGGRGGRGGGYGFGGGNGGSGGGGGGGAGSCYNCGGFGHMARDCIKGSSGGGGGGGGACFKCGEYGHLARDCASGSSNFGRGGRFGGSGGAGGGSTCFNCGKAGHFARECPEAN 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53574057 53574818 - Bda008771.1 Bda11g01834 16942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01834 199 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 98 - -
Bda11g01834 199 PANTHER COLD SHOCK DOMAIN PROTEIN 2 100 198 - -
Bda11g01834 199 SUPERFAMILY Retrovirus zinc finger-like domains 108 160 IPR036875 GO:0003676|GO:0008270
Bda11g01834 199 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Bda11g01834 199 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Bda11g01834 199 SMART c2hcfinal6 115 131 IPR001878 GO:0003676|GO:0008270
Bda11g01834 199 SUPERFAMILY Retrovirus zinc finger-like domains 168 197 IPR036875 GO:0003676|GO:0008270
Bda11g01834 199 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Bda11g01834 199 ProSiteProfiles Zinc finger CCHC-type profile. 116 129 IPR001878 GO:0003676|GO:0008270
Bda11g01834 199 Pfam Zinc knuckle 115 129 IPR001878 GO:0003676|GO:0008270
Bda11g01834 199 Pfam Zinc knuckle 181 197 IPR001878 GO:0003676|GO:0008270
Bda11g01834 199 Pfam Zinc knuckle 143 158 IPR001878 GO:0003676|GO:0008270
Bda11g01834 199 ProSiteProfiles Zinc finger CCHC-type profile. 144 157 IPR001878 GO:0003676|GO:0008270
Bda11g01834 199 Gene3D - 176 199 - -
Bda11g01834 199 Gene3D - 111 138 - -
Bda11g01834 199 Gene3D - 139 168 - -
Bda11g01834 199 PANTHER COLD SHOCK PROTEIN 2 1 98 - -
Bda11g01834 199 PANTHER COLD SHOCK PROTEIN 2 100 198 - -
Bda11g01834 199 ProSiteProfiles Zinc finger CCHC-type profile. 182 197 IPR001878 GO:0003676|GO:0008270
Bda11g01834 199 CDD CSP_CDS 7 69 IPR002059 GO:0003676
Bda11g01834 199 Gene3D - 2 69 IPR012340 -
Bda11g01834 199 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Bda11g01834 199 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Bda11g01834 199 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Bda11g01834 199 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Bda11g01834 199 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Bda11g01834 199 SUPERFAMILY Nucleic acid-binding proteins 5 72 IPR012340 -
Bda11g01834 199 SMART csp_8 7 72 IPR011129 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01834 K09250 CNBP; cellular nucleic acid-binding protein - csv:101216334 186.422
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01834 Bda-Chr11:53574057 Bda15g01039 Bda-Chr15:19432940 6.10E-33 dispersed
Bda11g01834 Bda-Chr11:53574057 Bda14g00981 Bda-Chr14:7965433 2.12E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1119 Blo04g00883 . . . Bpe15g00473 Bpe13g00413 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0853 Cone12ag0714 Cone6ag1686 . . . . . . . Bda11g01834 . . . Bma03g00959 Bma06g00094 . . . Cma16g01239 . . . . . . . . . . . . . . . . . . . Lsi07g01102 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006925 2 0 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16736 PF00313 CSD 2.30E-23 CL0021 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01834 Bda_Chr11 FPKM 37.634518 46.044785 30.840193 29.72389 23.576571 20.439632 25.209059 17.106405 17.815611