Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01843 ATGCGGGCGCTTTGCGACTCTTGTGAAAGTGCACCTGCTACTGTATTTTGCGCCGCCGACGAGGCCGCCCTCTGCCGTGCCTGTGACGAGAAGGTAGTCCATTTGTGTAATAAGCTAGCCAGCAGACATATAAGAGTAGGACTAGCGAATCCCAGCGATGTTCCTCAATGCGATATATGCGAAAATGCTCCTGCTTTCTTCTACTGCGAGGTAGATGGCAGTTCCCTTTGTTTGCAATGCGATACAGTTGTTCACGTTGGAGGTAAAAGAACTCATAAAAGATACCTTGTGTTGAGGCAGAGAGTCGAGTTTCCAGGCGATAAACCCGGAAGTTTGGATGATCCAGCTCAACCAGCCACTGACGGCAGTGAGACGAAACGGCTACAAAATCAACTGCCCAAAGTTACAGAGGGAGACAACTGGAAAAATGATCGTCATTCTGCTGATCCAAATGATGTTGTGGATGGGCATAATGAGACAGACAGTAAAATGATTGATCTGAATATGAAGCCTCTTCGAATTCCTGGGCAAGCTTCAAATGATCAGGTAAGGTTGCATTGTTTGATCAATTGGTAA 576 46.53 MRALCDSCESAPATVFCAADEAALCRACDEKVVHLCNKLASRHIRVGLANPSDVPQCDICENAPAFFYCEVDGSSLCLQCDTVVHVGGKRTHKRYLVLRQRVEFPGDKPGSLDDPAQPATDGSETKRLQNQLPKVTEGDNWKNDRHSADPNDVVDGHNETDSKMIDLNMKPLRIPGQASNDQVRLHCLINW 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53635914 53637114 + Bda008780.1 Bda11g01843 16951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01843 191 MobiDBLite consensus disorder prediction 138 159 - -
Bda11g01843 191 MobiDBLite consensus disorder prediction 122 137 - -
Bda11g01843 191 MobiDBLite consensus disorder prediction 106 159 - -
Bda11g01843 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 182 - -
Bda11g01843 191 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Bda11g01843 191 ProSiteProfiles Zinc finger B-box type profile. 52 97 IPR000315 GO:0008270
Bda11g01843 191 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 182 - -
Bda11g01843 191 Pfam B-box zinc finger 54 93 IPR000315 GO:0008270
Bda11g01843 191 SMART bboxneu5 52 97 IPR000315 GO:0008270
Bda11g01843 191 SMART bboxneu5 1 48 IPR000315 GO:0008270
Bda11g01843 191 CDD Bbox1_BBX-like 4 48 - -
Bda11g01843 191 Gene3D Classic Zinc Finger 2 96 - -
Bda11g01843 191 CDD Bbox1_BBX-like 57 97 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda10g00172 Bda11g01843 CCT
Bda10g00172 Bda11g01843 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01236 Bda-Chr8:50639497 Bda11g01843 Bda-Chr11:53635914 1.38E-23 dispersed
Bda11g01843 Bda-Chr11:53635914 Bda14g00574 Bda-Chr14:4384124 4.40E-22 dispersed
Bda10g00172 Bda-Chr10:5344462 Bda11g01843 Bda-Chr11:53635914 5.29E-89 transposed
Bda01g00506 Bda-Chr1:32057229 Bda11g01843 Bda-Chr11:53635914 6.74E-22 wgd
Bda11g01843 Bda-Chr11:53635914 Bda14g00989 Bda-Chr14:8030086 5.96E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16737 PF00643 zf-B_box 8.00E-08 No_clan Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01843 - - tcc:18610806 275.404