Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01845 ATGGAAGTTGATGACCAACCTGCTTCGGGATTGCGTAAAGCTCTTATTCATGGTGTAGGGTCGACCCAGCTGGGGGGCCTGAGGATTCACAATTCCGTCCCCTGCTCGGAGCTTATGGATGTCGATCAGTCCCGAACCTCACGTGCTATGGACGATTCCCAGCTTCTCGGAGGTCCTGACTCTGTTCCGACTGAACGCGTGGATGATATGGCGGCTGCAATGGGTGTCCCTTTAGCGGATATTGCGGGGAAGGTGAGGGCTGAGGAGAATGGTTTGGGTAAGCGGAGACGGGGACGGCCCCCTCGGGGTCAACAAAAAAAGACGCCGACACCGAGGAAGAGCATTAGTAGCGACGAAGAGGATGTCTGTTTTATATGCTTTGATGGTGGGAGCCTAGTTCTTTGTGATCGCCGGGGCTGCCCCAAGGCCTATCACCCTGCTTGCATCAAGAGGGACGAAGCATTCTTTCGATCTACGGCTCAATGGAATTGTGGATGGCATATATGCAGCAGTTGCCGGAAGGCGTCGCATTATATGTGCTACACGTGTACTTATTCTTTGTGCAAAGGATGCATTAAGGATGCTGATTATCAATGTGTTAGGGGTAGCAAAGGACTGTGTGGAACTTGTATGAGAACTATAATGCTATTAGAGAAAAGCTTGCCGGGAAGTGGAGAACATTTGGTTCAAGTTGATTTTGATGATAAAAGTAGTTGGGAGTATCTTTTCAAAATCTATTGGGTTTACTTAAAACAAAAGCTGTCTTTAACTCTTGATGATCTAATTCGAGCTAAAAATCCTTGGAACGGAGGCGGGACAATGGATCAAAATGGGGAATCAAATGGCAATTGTCATGATGCTAATAATGGCAAGAACTGTCGTATCGATAGTGGTGGAGGTGCAATTGCTGCCAATTCTAAGAGGAAAACATTTAAGAGGCAGCAAAATTTTCCCTCCAGGGTAAACTCGACGAATGATAAGATGACTATTGAAGGAAATTCTTGGGCTACAAGGGAGCTTTTGGAGTTTGTTGCTCACGCGAGAAATGGTGATACGTCTGCGCTTTCTCAGTTTGATGTACAGTCTCTAGTGCTGGAATATATTAAAGCAAATAATCTTCGTGATCCTCAACAGAGAAGTCATATTATTTGTGATCGTACGCTGATGAATCTGTTTGGAAAACAACGAGTTGGTCATTTTGAAATGCTCAAGCTTCTTGAATACCATTTTCTCACAAAAGAAAGATCTTTAGCAGTCGACAGAAATAGCAAAGTTCTTGATGTCGTAGTTGGCCATGTGGAAGAAAAAGGAAATGTTAGTTACCAATCAATAAGTGATAGTGAAAGAAAGCGTAAAACACGTAAAAAGGCAGATGATAGGAAGCAACTAATGAATCCAGATGAATATGCAGCTATTGATGTTCACAACATCAACCTGATTTACTTATCGCGTAATTTGATAGAGTCCATAATGGGTGATGCAGAAAGCTTCCGTGATAAAGTTGTGGATTCATTTGTTCGAATACGAATTTCAAACCATGATCAAAAGCCTGACGTGTATAGGCTTGTACAAGTTGTAGGCACTAGCAAGAGTTCTGAGCCATATGTGATTGGTGAGAAAACAGCTGATGTAATGCTTGATGTATTGAATTTAGACAAGAAAGAGGCAGTATCAATCGAAGGCATTTCAAATCAAGACTTTTCTGAGGATGAATGCAGGCGTCTACATGAGAGTGTAAAGTGTGGGCTTCTTAAGAGATTTACTGTGCGTATGGAATCAGAGATATTGCGGCTTAATCATCTGCGAGACCGAGCAAGTGAGAAGGGACACAAAAAAGAATATCCTTTTCTATTAGAGTGTGTGGAAAAATTACAGCTTCTTAACTCTCCCGAAGAACGACAGCGTCGGCTTGTTGAAGTCCCCGAAATACATGTGGATCCAACTTTGGATCCGAGTCTCAAATCTGACGACCATACAAAAGAATTAAACAAGAGTAAGCAAGCTACTTCAAAGACTCGTTTTCTTATGAAACATTCTTATTGGTTTTTTAAGGGCACTGGTAGGAAGTGTGGAGGACGGGATCAATTGATTAATTCGAGAAGCAGGATAGAAAATCGTTCGGCTATTACTTCTGGACAAAATATGCAGATATGTACAGCCAATCATTTGAATAATCCTACCAGTTTAGTCATTCATAATGGGAGTAATCCTCTTTCAAATGGGATAGAACACTCCAATGATATTGATATGGACAAGATTTGGCACTACCAAGACCCGGCTGGAAAAATTCAGGGTCCGTTTTCAATGTCACAGCTGCAAAAATGGAGTTCAAGTGGACACTTCCCTCCTCATTTAAGAGTATGGAGGATAAGTGAAATGCCTGGTGATTCTATACTTCTAACCGATGCGATGAAGGGGGAACATGGGACGATAGGGGACAGTAGCTGCGAGAATCGTTCTGACAGTGACGGCTGTTCTGGGCAGTCTTCTGGTCAAAATTGGAGACCTCTGCCTGCAAATGCTACTCTGGAATCTAGAGGTGGTGGCATTGCCTTGTCTAATTCGATTGAACCACAAAACCTGAACTTTGATTTCCCTGATCTTCCTAGCCCCACTCCGGCGAAACCGGATGTGGGCCTTACAGATCAAGCTGCTGAAATCAAACAATCTGCATCTTCAAGGATCCTTGTTCAAGATTCAGTTCCTAGCTGGAGTACAGGTTCGAGTTTGGTCGGCGGAAGGAAACAGCTTCCTGTTTATTCTCCTACACCAGCCAAAGCTTCTGTGGAGGAATGGGACACAACGATGATGAACTGTCGTGATGATATGACGCTGGGTTGTAAAACCGATTGTTTTAGTTCTGTCGGGGGCTTGAGTCCTACTCTAGAGATGGGAAGAGGCGATGCTCTGAGCTCCACCGGTGATGTTAGGAAATTGGAAGGACAAGGCGTGCCCTCTCAGCAAGCAGAGGCTATTACAGCTGCCATAACCGAAGTCTTGAATGATAGCTTGGAAAATGTGTCTCAGTCATTCGTTTCGAAAGCAGAAATGCAGAAAATTCAAATGATTCAAGAATCCAATTTATCCAAATTCAAATCTGAAGTCCAAAGCTCGCAGGGAAATCATTTCTCTTTATTAGGACACGAGACTGAAAAACTTCGGAACGATATTGAGAAAATGCGCAGTGAATTAAGGTATGAAATTGACAAAGTTACTGCTGGGCAGCGGTTGGATTTGAATCTTGAAAGGGGGAGGATAAGGGACGAATTAGCGAATCAGAATGCTGAAACGACAAACTTAACCAACAAACTTGACAGGGAAATTCATGCGCTAAGAGCTCAATTGGAAGCTGCTAAGTACGAGGTGATTAAATATTGCATAGGTACTCTTGTTTCTATTTCTGCTGTTGGTCTGGCTGTCCTCAGGATCTTGATGTAA 3438 43.22 MEVDDQPASGLRKALIHGVGSTQLGGLRIHNSVPCSELMDVDQSRTSRAMDDSQLLGGPDSVPTERVDDMAAAMGVPLADIAGKVRAEENGLGKRRRGRPPRGQQKKTPTPRKSISSDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSTAQWNCGWHICSSCRKASHYMCYTCTYSLCKGCIKDADYQCVRGSKGLCGTCMRTIMLLEKSLPGSGEHLVQVDFDDKSSWEYLFKIYWVYLKQKLSLTLDDLIRAKNPWNGGGTMDQNGESNGNCHDANNGKNCRIDSGGGAIAANSKRKTFKRQQNFPSRVNSTNDKMTIEGNSWATRELLEFVAHARNGDTSALSQFDVQSLVLEYIKANNLRDPQQRSHIICDRTLMNLFGKQRVGHFEMLKLLEYHFLTKERSLAVDRNSKVLDVVVGHVEEKGNVSYQSISDSERKRKTRKKADDRKQLMNPDEYAAIDVHNINLIYLSRNLIESIMGDAESFRDKVVDSFVRIRISNHDQKPDVYRLVQVVGTSKSSEPYVIGEKTADVMLDVLNLDKKEAVSIEGISNQDFSEDECRRLHESVKCGLLKRFTVRMESEILRLNHLRDRASEKGHKKEYPFLLECVEKLQLLNSPEERQRRLVEVPEIHVDPTLDPSLKSDDHTKELNKSKQATSKTRFLMKHSYWFFKGTGRKCGGRDQLINSRSRIENRSAITSGQNMQICTANHLNNPTSLVIHNGSNPLSNGIEHSNDIDMDKIWHYQDPAGKIQGPFSMSQLQKWSSSGHFPPHLRVWRISEMPGDSILLTDAMKGEHGTIGDSSCENRSDSDGCSGQSSGQNWRPLPANATLESRGGGIALSNSIEPQNLNFDFPDLPSPTPAKPDVGLTDQAAEIKQSASSRILVQDSVPSWSTGSSLVGGRKQLPVYSPTPAKASVEEWDTTMMNCRDDMTLGCKTDCFSSVGGLSPTLEMGRGDALSSTGDVRKLEGQGVPSQQAEAITAAITEVLNDSLENVSQSFVSKAEMQKIQMIQESNLSKFKSEVQSSQGNHFSLLGHETEKLRNDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHALRAQLEAAKYEVIKYCIGTLVSISAVGLAVLRILM 1145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53642575 53651857 + Bda008782.1 Bda11g01845 16953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01845 1145 CDD GYF 751 806 IPR003169 GO:0005515
Bda11g01845 1145 ProSiteProfiles SWIB/MDM2 domain profile. 329 412 IPR003121 -
Bda11g01845 1145 SMART gyf_5 752 807 IPR003169 GO:0005515
Bda11g01845 1145 MobiDBLite consensus disorder prediction 441 462 - -
Bda11g01845 1145 Pfam Coiled-coil domain-containing protein 90-like 976 1144 IPR024461 -
Bda11g01845 1145 Gene3D - 974 1071 - -
Bda11g01845 1145 SMART PHD_3 122 168 IPR001965 -
Bda11g01845 1145 MobiDBLite consensus disorder prediction 806 841 - -
Bda11g01845 1145 ProSiteProfiles Plus3 domain profile. 471 606 IPR004343 GO:0003677
Bda11g01845 1145 Gene3D SWIB/MDM2 domain 322 418 IPR036885 -
Bda11g01845 1145 MobiDBLite consensus disorder prediction 648 668 - -
Bda11g01845 1145 Pfam Plus-3 domain 476 579 IPR004343 GO:0003677
Bda11g01845 1145 SUPERFAMILY Plus3-like 472 590 IPR036128 GO:0003677
Bda11g01845 1145 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 814 936 - -
Bda11g01845 1145 SUPERFAMILY GYF domain 748 805 IPR035445 -
Bda11g01845 1145 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 36 807 - -
Bda11g01845 1145 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 814 936 - -
Bda11g01845 1145 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 36 807 - -
Bda11g01845 1145 MobiDBLite consensus disorder prediction 813 839 - -
Bda11g01845 1145 Gene3D - 753 809 IPR035445 -
Bda11g01845 1145 MobiDBLite consensus disorder prediction 648 667 - -
Bda11g01845 1145 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 934 1064 - -
Bda11g01845 1145 SUPERFAMILY FYVE/PHD zinc finger 111 167 IPR011011 -
Bda11g01845 1145 ProSiteProfiles GYF domain profile. 751 805 IPR003169 GO:0005515
Bda11g01845 1145 CDD PHD5_NSD 122 167 - -
Bda11g01845 1145 Pfam GYF domain 754 792 IPR003169 GO:0005515
Bda11g01845 1145 SUPERFAMILY SWIB/MDM2 domain 335 412 IPR036885 -
Bda11g01845 1145 SMART rtf1 471 581 IPR004343 GO:0003677
Bda11g01845 1145 MobiDBLite consensus disorder prediction 87 115 - -
Bda11g01845 1145 Pfam SWIB/MDM2 domain 345 410 IPR003121 -
Bda11g01845 1145 ProSiteProfiles Zinc finger PHD-type profile. 120 186 IPR019787 -
Bda11g01845 1145 ProSitePatterns Zinc finger PHD-type signature. 123 183 IPR019786 -
Bda11g01845 1145 Coils Coil 1087 1121 - -
Bda11g01845 1145 SMART swib_2 324 415 IPR019835 -
Bda11g01845 1145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 210 IPR013083 -
Bda11g01845 1145 CDD SWIB-MDM2_like 335 410 - -
Bda11g01845 1145 Gene3D - 472 596 IPR036128 GO:0003677
Bda11g01845 1145 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 934 1064 - -
Bda11g01845 1145 MobiDBLite consensus disorder prediction 445 462 - -
Bda11g01845 1145 MobiDBLite consensus disorder prediction 40 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01845 - - - tcc:18610813 816.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01423 Bda-Chr11:18833944 Bda11g01845 Bda-Chr11:53642575 3.92E-08 dispersed
Bda11g01845 Bda-Chr11:53642575 Bda14g00578 Bda-Chr14:4421770 1.55E-180 dispersed
Bda03g00881 Bda-Chr3:7612054 Bda11g01845 Bda-Chr11:53642575 1.22E-90 transposed
Bda11g01845 Bda-Chr11:53642575 Bda14g00990 Bda-Chr14:8054012 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16738 PF07798 DUF1640 1.40E-69 No_clan Bda TR