Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01846 ATGGAATCCGTAGAGTTGGCGTTGAAATCTAGCTTTAGGAAGAAGATGTCTGTGAATTTGAGCCCCCAGCTACGTTGGGATGAATTGGGGTCGTCCGGTGTCCAAAATGTCGTCTCTTGTGATGACTTTTCTGTAGACGAACTCCTCAATTTCTCTAACGAAGATGGATTTGAAGGCAAAGAGAATGGAGAAGAAGAAAACGACGACCATAAGGGCACAGATGATTTGGCAGACCTCGAATGGTTCTCCCATTTCGTTGATGATTCCTTCCCCGAACACTCTGCGCCATTTCCGGCGGGAATTTGGACAGGAAAGCCGAAGCAGAGTGAACTAGAGAGAGAAGCAAAGGCTTTTACTCCCCCGCAGCCTTGTTTCCAAACTCCGATTCCTGCTAAGGCGAGAAGCAAGCGGCCGAGAACCGGAGGTCGGGTTTGGGTTGTCGGATTCTCGTCGTTAACGGAAACTTCCTCAAGCTCAACTACGTCGTCGTCTTCCTCTTCATCACCGTCAAGCCCTTTGCTCAACAACATCATGGTTCCTTTTCCCGACGAGATAGTTTTTCGGTACGCAAAGCCGCCGGCGAAGAAACCGAAGATAAAATCACCAGTCAACGGAAATGGCAGAAGTGGAACCACCCAGACAACTCGCCGGTGCAGCCATTGCGGCGTGCAGAAAACACCACAATGGAGAGCCGGTCCTCTCGGAGCCAAGACACTCTGTAACGCATGCGGTGTGCGATACAAATCGGGTCGACTCCTACCCGAATATAGACCCGCGTGCAGCCCAACATTTTCAAGTGAATTACACTCAAATCACCACCGTAGAGTCCTGGAAATGCGGCGGAAGAAGGAGGATCCAGGACTTCCAGAGCAGGGTTTCACCCCTCCTCCGGTCGTTCCGAGTTTTTGA 909 50.94 MESVELALKSSFRKKMSVNLSPQLRWDELGSSGVQNVVSCDDFSVDELLNFSNEDGFEGKENGEEENDDHKGTDDLADLEWFSHFVDDSFPEHSAPFPAGIWTGKPKQSELEREAKAFTPPQPCFQTPIPAKARSKRPRTGGRVWVVGFSSLTETSSSSTTSSSSSSSPSSPLLNNIMVPFPDEIVFRYAKPPAKKPKIKSPVNGNGRSGTTQTTRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRRVLEMRRKKEDPGLPEQGFTPPPVVPSF 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53656847 53657958 - Bda008783.2 Bda11g01846 16954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01846 302 Pfam GATA zinc finger 218 252 IPR000679 GO:0006355|GO:0043565
Bda11g01846 302 PANTHER GATA TRANSCRIPTION FACTOR 73 286 - -
Bda11g01846 302 Gene3D - 208 285 IPR013088 GO:0006355|GO:0008270
Bda11g01846 302 MobiDBLite consensus disorder prediction 154 174 - -
Bda11g01846 302 MobiDBLite consensus disorder prediction 120 139 - -
Bda11g01846 302 PANTHER GATA TRANSCRIPTION FACTOR 1 71 - -
Bda11g01846 302 SMART GATA_3 212 266 IPR000679 GO:0006355|GO:0043565
Bda11g01846 302 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Bda11g01846 302 MobiDBLite consensus disorder prediction 282 302 - -
Bda11g01846 302 CDD ZnF_GATA 217 265 IPR000679 GO:0006355|GO:0043565
Bda11g01846 302 PANTHER GATA TRANSCRIPTION FACTOR 1 71 - -
Bda11g01846 302 PIRSF Txn_fac_GATA_plant 1 73 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bda11g01846 302 PIRSF Txn_fac_GATA_plant 65 292 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bda11g01846 302 MobiDBLite consensus disorder prediction 53 74 - -
Bda11g01846 302 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 275 - -
Bda11g01846 302 PANTHER GATA TRANSCRIPTION FACTOR 73 286 - -
Bda11g01846 302 MobiDBLite consensus disorder prediction 195 215 - -
Bda11g01846 302 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01846 - - - qsu:112033603 303.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda04g00030 Bda11g01846 CCT
Bda04g00030 Bda11g01846 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00953 Bda-Chr8:18365029 Bda11g01846 Bda-Chr11:53656847 1.84E-57 dispersed
Bda08g00959 Bda-Chr8:18763743 Bda11g01846 Bda-Chr11:53656847 9.56E-58 dispersed
Bda11g01846 Bda-Chr11:53656847 Bda10g00830 Bda-Chr10:42690265 1.74E-43 dispersed
Bda11g01846 Bda-Chr11:53656847 Bda14g00992 Bda-Chr14:8132974 8.80E-70 wgd
Bda11g01846 Bda-Chr11:53656847 Bda04g00030 Bda-Chr4:483324 9.83E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16739 PF00320 GATA 1.70E-16 CL0167 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01846 Bda_Chr11 FPKM 0.483498 0.247642 1.592169 1.028783 0.742579 0.799894 0.554194 6.539944 6.262867