Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01860 ATGAATGATCTGATGACGAAATCGTTCTTAAGTTACGTGGAATTGAAGAAACAGTCGATGAAAGACATGGAAGCCGATTACGACGTTGGAATGGGCCAACTCAATCCTTCTTACGAACGAAATCTCTCCAAGTTCTTCGAAGAAGTTGGCCAAATCAAAACCGAAATGGAAGAGATCTCCAATCTCTTGGACGAACTCAAAACACTCAATGAGGAGGCAAAATCGATTTTCAGCGCCAAGATTCTTCGCGGGCTTAGAGATCGAATGGATTGGAACATGGTTTTGATCCTTCGCAAAGCAAAGGTCGTAAAATCGAGGCTAGAATTGCTCGATCAATCCAATGCGAAAAATAGAAGAAATTCAACAGCCTTTAAGGAATGCAGTCCTGTTGATAGAACCAAGGTTTCCATCACAAATGGGATAAGAGTCAGGCTGAGAGAATTGATGAATGATTTTCAGTTTTTGAGAGAGAGAATTCTGGATGATCACAAGGAAGATCTAAGGAGGACGTACTATACAGCAACCGGTGAGCAACTAAGTGAGGAAATGATCGAGAAGATAGCCATGGGAGGCGAGAGAATTGAACTATTGCAGGATAAAAAAGACAACAGAGAGAGCAATGACGCCATTTTAGACATTCAGAGAAGCTTGAACAACCTTCATCAAGTATTTCTTGACATGGCTGTGCTGGTTGAGAATCAAGGAGAAAAAATGGATGACATCGAGGAGAACGTGGCTAGTGCAGGAACCTTCATCCATGGCGGAACGAATAGTCTTTACTACGCTAATCAGACGAAGAAGGGGAGCAAGAAATGGGCTTACTGGGTTGCGGCTGTCGGACTGATCATAATCCTGGTTTGCTTTATTGCAACCTTAGTTTCTTGA 885 42.49 MNDLMTKSFLSYVELKKQSMKDMEADYDVGMGQLNPSYERNLSKFFEEVGQIKTEMEEISNLLDELKTLNEEAKSIFSAKILRGLRDRMDWNMVLILRKAKVVKSRLELLDQSNAKNRRNSTAFKECSPVDRTKVSITNGIRVRLRELMNDFQFLRERILDDHKEDLRRTYYTATGEQLSEEMIEKIAMGGERIELLQDKKDNRESNDAILDIQRSLNNLHQVFLDMAVLVENQGEKMDDIEENVASAGTFIHGGTNSLYYANQTKKGSKKWAYWVAAVGLIIILVCFIATLVS 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53717274 53718158 + Bda008798.1 Bda11g01860 16968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01860 294 Coils Coil 49 79 - -
Bda11g01860 294 CDD SynN 42 194 IPR006011 GO:0016020
Bda11g01860 294 PANTHER SYNTAXIN-112 3 290 - -
Bda11g01860 294 SUPERFAMILY t-snare proteins 41 255 IPR010989 GO:0016020|GO:0016192
Bda11g01860 294 PANTHER SYNTAXIN 3 290 IPR045242 -
Bda11g01860 294 CDD SNARE_syntaxin1-like 204 259 - -
Bda11g01860 294 Gene3D - 38 167 - -
Bda11g01860 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Bda11g01860 294 Gene3D - 195 293 - -
Bda11g01860 294 SMART SynN_4 37 164 IPR006011 GO:0016020
Bda11g01860 294 Pfam Syntaxin 44 235 IPR006011 GO:0016020
Bda11g01860 294 SMART tSNARE_6 195 262 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00929 Bda-Chr6:25095255 Bda11g01860 Bda-Chr11:53717274 8.95E-117 dispersed
Bda09g01276 Bda-Chr9:44512231 Bda11g01860 Bda-Chr11:53717274 1.17E-65 dispersed
Bda11g01860 Bda-Chr11:53717274 Bda02g00552 Bda-Chr2:46377171 3.89E-27 dispersed
Bda08g00943 Bda-Chr8:17704860 Bda11g01860 Bda-Chr11:53717274 6.53E-08 transposed
Bda11g01860 Bda-Chr11:53717274 Bda14g01003 Bda-Chr14:8450716 8.94E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01860 K08486 - jre:108997509 391.734